Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda14g00310 ATGTTTTTCCAGCACAAAACCTTTTGGATGCCAAGTAATGCTGGGTGCTTAACTGATGGGGAGATGGGGTATGATAATTCTTCCAGAATGGAAGCAAAGCGTGGCCATCAATGGTTCACAGATGGCAGTACACCAGAATTATTTAGCAGCAAGAAGCAGGCAATAGAAACAGTTAGCGGTAGACCAGTTCCGGGGGTTTCACATATGGATTTTTCTCTATGGGACAACTCTTCTGGTTTTCAGTCTGCTCCTGGGCAGTTCAGTGATCGCCTCTTTGGATCTGAACCTATTCGAACTGTCAATTTGGTTGATAGAAATATCTCTGACATTGGACCTGCGGATATGCACATAGGAAGAAAAGACTTTGAGAATCAATATGGTAATGATTCCTCTATAGGCTTAACCATGCCCCGTGCTATGGAAGATCCCATATCATGTCAAAATTTTGGTGGAATTAGAAAAGTCAAAGTAAATCAAGTAAGGGATTCTGATAACGCCATGCCTGCACCCATAAGACACTCATTCAGCAGAGAAAATAGCGGCCCAATTACAATGGGCACCACATATGGCAAAAATGATGAAAACATTATGTCGTTGGGCCAGAATTACTCCAATAAGAACGAGAACAACATTTCGATGCGGTCTGCTTTCAGGAAGACCGATGATAATTTCATTTCAATTGGTCATAGCTTCAATAAGGATGATGGTAATTTTATTTCTATGGGTCACAACTACACCAAGAGCGATACAAATATTTTATCAGTTAGTCAGCCCTTTGACAAAGTTGATGGAACTTTTATATCAATGGGTCAGTCATATGAGAAAACTAATGGAAGTGTCATTTCACTGCAAACCTCTTACAACAAGGGGCCTGGAAACTTCATCTCGATGAGGCCAACTTATTGTAAAGCAAATGAAAATTTCGTTTCAATGGCTTCCTCCTATAGTAAGGGAACAAGGGAGGCTTTATCATTTACAACAACCTATGATAAAGTTGATACTGAAATTGTAAATTTGGATCCTAACTATGACAGAGGAGACTCTGGGATGCTAGATATGGGCCACAACTATAACAAGGGCAAGGGCACTACCATATCTTTTGGAGGGTTTGACGAAGAACCAGAGACAAATAATCCCTCTGGTGGGATCACCAGCAGCTATGGTTTGTTGATGGGCACTCAAAATTCTTCTCATATTTCAGAAGTATCCATCCAGAAAGATTTTGTGGATTCAAATGCTGGAAGTGTCAACAATGTTTTGAAAGCTAATAATCCTAAAATGGACAACAGTGAAAAAAGTAGAGAGCCAAAGACAACTAAGAAGGTTTCCCCAAATAATTTTCCTTCAAATGTCAAAAGTTTGTTATCTACTGGTATGCTTGATGGTGTTCCCGTGAAATATGTTTCTTGGTCAAGAGAGAAAAACCTCAAAGGAATTATAAAAGGAACTGGCTATTTGTGCAACTGTGATAAGTGTCAGCAATCTAAGGCTCTCAATGCTTATGAATTTGAGTGTCATGCTGGTTGCAAGACCAAACATCCCAATAATCACATTTATTTTGAGAATGGAAAGACCATCTACACCATCGTTCAAGAGTTAAAGAACACACCACAGGAGATGCTATTTGATGCCATTCAGAGCGTGACTGGCTCGCCTATTAATCAGAAAAACTTCCGTATTTGGAAAGCTTCATATCAAGCTGCCACCCGCGAACTTCAGCGTATTTATGGGACAGACGAAGGAATCATGCCATCTTGA 1758 40.05 MFFQHKTFWMPSNAGCLTDGEMGYDNSSRMEAKRGHQWFTDGSTPELFSSKKQAIETVSGRPVPGVSHMDFSLWDNSSGFQSAPGQFSDRLFGSEPIRTVNLVDRNISDIGPADMHIGRKDFENQYGNDSSIGLTMPRAMEDPISCQNFGGIRKVKVNQVRDSDNAMPAPIRHSFSRENSGPITMGTTYGKNDENIMSLGQNYSNKNENNISMRSAFRKTDDNFISIGHSFNKDDGNFISMGHNYTKSDTNILSVSQPFDKVDGTFISMGQSYEKTNGSVISLQTSYNKGPGNFISMRPTYCKANENFVSMASSYSKGTREALSFTTTYDKVDTEIVNLDPNYDRGDSGMLDMGHNYNKGKGTTISFGGFDEEPETNNPSGGITSSYGLLMGTQNSSHISEVSIQKDFVDSNAGSVNNVLKANNPKMDNSEKSREPKTTKKVSPNNFPSNVKSLLSTGMLDGVPVKYVSWSREKNLKGIIKGTGYLCNCDKCQQSKALNAYEFECHAGCKTKHPNNHIYFENGKTIYTIVQELKNTPQEMLFDAIQSVTGSPINQKNFRIWKASYQAATRELQRIYGTDEGIMPS 585
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 2096479 2099217 - Bda027045.1 Bda14g00310 20361

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda14g00310 585 PANTHER N-LYSINE METHYLTRANSFERASE 1 585 - -
Bda14g00310 585 MobiDBLite consensus disorder prediction 418 449 - -
Bda14g00310 585 Pfam Tify domain binding domain 478 533 IPR032308 -
Bda14g00310 585 MobiDBLite consensus disorder prediction 165 184 - -
Bda14g00310 585 PANTHER AUTOIMMUNE REGULATOR 1 585 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda14g00310 - - - csv:101206313 820.076
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda14g00310 Bda-Chr14:2096479 Bda03g01701 Bda-Chr3:56428546 5.35E-13 dispersed
Bda14g00310 Bda-Chr14:2096479 Bda15g00213 Bda-Chr15:4884941 1.18E-86 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bda08g00235 . 8 379 PHD Transcription Factor Family AT1G05380 54.8 1.5e-114 411.4
Bda03g01749 BCT 22 844 PHD Transcription Factor Family AT3G53680 53.6 2.2e-245 845.5
Bda14g00310 . 437 566 PHD Transcription Factor Family AT3G53680 53.8 4.0e-37 153.7
Bda15g00213 . 292 421 PHD Transcription Factor Family AT3G53680 53.1 3.4e-36 150.6
Bda08g00235 . 57 379 PHD Transcription Factor Family AT4G14920 59.6 4.0e-112 403.3
Bda03g00173 . 139 382 PHD Transcription Factor Family AT5G58610 54.0 4.2e-75 280.0
Bda10g01164 . 10 625 PHD Transcription Factor Family AT5G22260 50.1 3.7e-174 608.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003985 2 1 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 8 1 0 44
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda14g00310 Bda_Chr14 FPKM 14.099686 16.927284 12.430459 13.326955 15.370952 17.100311 18.108164 18.793745 20.705206