Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Bda14g00335 | ATGTTGGATCTTAACTTTGGTGTTACTGTTTCTCGTAGTGATTCAATGGAGGTAGAAGATTTCCCAGCTAATTCAGCCACTCAAATGGAAGATTCAGGCACTTCAAATTCTTCCATTGTTAACGCAGAAGAAGCTCTAGCTCCAAGTTATAGTGGAAAAGACGAAGATTCTTCAAACAACTCGTCCGGATTCATTTTCGGCATCATGAGAAAACAGATGGAAAGCGACGGAGCGAATTGGGTCGATGATGCAAACCCATCACCTGAACTACTCACCCAACCTCTTTTCCCTGTCGCCGCAAACGGGAAAGACTGGGATTTGGAGCTTCGGTTGGGATTAGCTGCCTCGGCGACGCCTCAGTCGTTGAACTTGTCGTTTCCCGACTCCGGTGGTGGTCAAACGGAGCTCAAAAGTTTTCAGCAAAAGCAACAGCTTGTAAGGAAAAGCCGGCGAGGTCCGCGATCTCGGAGCTCTCAGTACCGTGGCGTTACGTTTTACCGGCGAACCGGCCGGTGGGAATCGCATATCTGGGATTGTGGGAAACAAGTATATTTGGGTGGATTTGACACTGCTCATGCTGCAGCTAGAGCATATGATAGAGCTGCCATTAAATTCCGAGGAATTGATGCTGATATCAACTTCAACACCAGCGATTACGAAGAAGATCTAAAACAGACTAAGAACTTGACCAAGGAGGAATTTGTGTACATTCTTCGCCGGCATAGTAGCGGGTTTTCTCGAGGGAGCTCGAAATTTCAAGGTGCCATGTTTCGAAAGTGTGGGCAATGGGAGGCCAAGGTCGAGCCGATGCTCGGAAAGAAGTAA | 825 | 47.64 | MLDLNFGVTVSRSDSMEVEDFPANSATQMEDSGTSNSSIVNAEEALAPSYSGKDEDSSNNSSGFIFGIMRKQMESDGANWVDDANPSPELLTQPLFPVAANGKDWDLELRLGLAASATPQSLNLSFPDSGGGQTELKSFQQKQQLVRKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGIDADINFNTSDYEEDLKQTKNLTKEEFVYILRRHSSGFSRGSSKFQGAMFRKCGQWEAKVEPMLGKK | 274 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 14 | 2389991 | 2391180 | + | Bda027071.1 | Bda14g00335 | 20386 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Bda14g00335 | 274 | SMART | rav1_2 | 159 | 221 | IPR001471 | GO:0003700|GO:0006355 | |
| Bda14g00335 | 274 | Gene3D | AP2/ERF domain | 158 | 217 | IPR036955 | GO:0003700|GO:0006355 | |
| Bda14g00335 | 274 | SUPERFAMILY | DNA-binding domain | 158 | 216 | IPR016177 | GO:0003677 | |
| Bda14g00335 | 274 | MobiDBLite | consensus disorder prediction | 17 | 42 | - | - | |
| Bda14g00335 | 274 | Pfam | AP2 domain | 159 | 207 | IPR001471 | GO:0003700|GO:0006355 | |
| Bda14g00335 | 274 | ProSiteProfiles | AP2/ERF domain profile. | 159 | 215 | IPR001471 | GO:0003700|GO:0006355 | |
| Bda14g00335 | 274 | PANTHER | AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR | 1 | 274 | - | - | |
| Bda14g00335 | 274 | CDD | AP2 | 159 | 217 | IPR001471 | GO:0003700|GO:0006355 | |
| Bda14g00335 | 274 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-7 | 1 | 274 | - | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Bda14g00335 | Bda15g00186 | CCT | |
| Bda14g00335 | Bda15g00186 | ECH |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Bda14g00335 | Bda-Chr14:2389991 | Bda14g01250 | Bda-Chr14:13001301 | 5.34E-12 | dispersed | |
| Bda14g00335 | Bda-Chr14:2389991 | Bda15g00186 | Bda-Chr15:4427851 | 1.67E-100 | wgd | |
| Bda14g00335 | Bda-Chr14:2389991 | Bda02g00787 | Bda-Chr2:48582555 | 1.18E-12 | wgd | |
| Bda14g00335 | Bda-Chr14:2389991 | Bda03g00754 | Bda-Chr3:6358952 | 3.95E-15 | wgd | |
| Bda14g00335 | Bda-Chr14:2389991 | Bda09g01480 | Bda-Chr9:46582710 | 7.76E-13 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 17009 | PF00847 | AP2 | 1.70E-10 | CL0081 | Bda | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Bda14g00335 | K09284 | - | jre:108997119 | 300.827 |