Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Bda14g00368 | ATGGCGGCCCCAGTGAATCTTACTCTTCTTCATCAGCACCCGTACCCTGATGCTGTTTCTGAAATGGTTCATCAGAGAGTAAAACATTCGGTATCCAGAAGAGAAATGCTGAGTCTCCAATCTAAGAACCAAGCCACTTGTCTCACAGGAAACCCAATCGACGACTGTTGGCGGTGCGACCAAAACTGGCAAACTAACCGGCAAAGGCTCGCCGACTGCGGCATTGGGTTTGGCCAAGACGCAATTGGAGGAAAAGGCGGCCAGATCTACACCGTCACCGACTCGTCCGATTTAAATCCGGCGAACCCAACTCCAGGAACTCTCCGGTACGCCGTCATCCAAGAAGAACCCCTATGGATCATCTTCGCTGGTGACATGACAATAAACCTAAAACACGAGCTTATCTTCAACAGCTTCAAAACCATCGACGGCCGTGGCGCCTCCGTCCACATTACAGGCGGGGGCTGCATAACCCTTCAGTACGTATCAAACGTAATAATCCACAACATCAACGTCCACAATTGTAGGCCAACGGGGAATACAAACATACGGTCGAGCCCAACCCACGTAGGGTTCCGTGGCAAGTCAGACGGCGATGGTATTTCCATCTTCGGCGCCAACAAAATCTGGATCGACCATTGCTCTCTCTCATACTGCACGGACGGCTTGATCGACGCAATCATGGGGTCCACTGGGATAACTATTTCGAACAACTATTTCTCGCATCATGACGAGGTGATGCTATTGGGAATGTATGCTATCGGCGGTAGTGCTAACCCCACCATAAACAGTCAGGGGAATAGGTACACTGCTCCGGCTGACACTAATGCCAAAGAGCATGGACAGGTGACGAGGCGTTGGGATACAGGTGGTGTGGAGTGGACGGACTGGAACTGGAGAACTGTGGGGGACATCATGGTAAACGGAGCATTTTTTGTGCCGTCAGGCGAGGGTCTTAGCGCTCAGTACAGTAAAGCTTCCAGTGTGGATCCAAAATCAGTCGGCCTGATTGATCAGCTCACCATCAACGCCGGTGTCTTTGGTGGCCTCAGGTAA | 1056 | 51.42 | MAAPVNLTLLHQHPYPDAVSEMVHQRVKHSVSRREMLSLQSKNQATCLTGNPIDDCWRCDQNWQTNRQRLADCGIGFGQDAIGGKGGQIYTVTDSSDLNPANPTPGTLRYAVIQEEPLWIIFAGDMTINLKHELIFNSFKTIDGRGASVHITGGGCITLQYVSNVIIHNINVHNCRPTGNTNIRSSPTHVGFRGKSDGDGISIFGANKIWIDHCSLSYCTDGLIDAIMGSTGITISNNYFSHHDEVMLLGMYAIGGSANPTINSQGNRYTAPADTNAKEHGQVTRRWDTGGVEWTDWNWRTVGDIMVNGAFFVPSGEGLSAQYSKASSVDPKSVGLIDQLTINAGVFGGLR | 351 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 14 | 2672466 | 2674250 | - | Bda027109.1 | Bda14g00368 | 20419 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Bda14g00368 | 351 | SUPERFAMILY | Pectin lyase-like | 39 | 321 | IPR011050 | - | |
| Bda14g00368 | 351 | PANTHER | PECTATE LYASE 18-RELATED | 5 | 250 | IPR045032 | GO:0030570 | |
| Bda14g00368 | 351 | PANTHER | PECTATE LYASE 18-RELATED | 251 | 349 | IPR045032 | GO:0030570 | |
| Bda14g00368 | 351 | Pfam | Pectate lyase | 133 | 251 | IPR002022 | - | |
| Bda14g00368 | 351 | Gene3D | - | 251 | 348 | IPR012334 | - | |
| Bda14g00368 | 351 | Gene3D | - | 50 | 250 | IPR012334 | - | |
| Bda14g00368 | 351 | PRINTS | Pollen allergen Amb family signature | 73 | 90 | IPR018082 | - | |
| Bda14g00368 | 351 | PRINTS | Pollen allergen Amb family signature | 197 | 218 | IPR018082 | - | |
| Bda14g00368 | 351 | PRINTS | Pollen allergen Amb family signature | 133 | 149 | IPR018082 | - | |
| Bda14g00368 | 351 | PRINTS | Pollen allergen Amb family signature | 97 | 122 | IPR018082 | - | |
| Bda14g00368 | 351 | PANTHER | PECTATE LYASE | 5 | 250 | - | - | |
| Bda14g00368 | 351 | PANTHER | PECTATE LYASE | 251 | 349 | - | - | |
| Bda14g00368 | 351 | SMART | amb_all | 125 | 275 | IPR002022 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Bda14g00368 | Bda-Chr14:2672466 | Bda09g01316 | Bda-Chr9:44937624 | 4.55E-137 | dispersed | |
| Bda14g00053 | Bda-Chr14:450586 | Bda14g00368 | Bda-Chr14:2672466 | 0 | wgd | |
| Bda14g00368 | Bda-Chr14:2672466 | Bda15g00151 | Bda-Chr15:4087033 | 0 | wgd | |
| Bda14g00368 | Bda-Chr14:2672466 | Bda03g00722 | Bda-Chr3:6094621 | 3.85E-164 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Bda14g00368 | K01728 | - | nnu:104604548 | 544.658 |