Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda14g00491 ATGTTCCACCCTAAGAAGCCATCAACTATGAATTCTCATGATCAAAGATCTTCCATGTGTGTCCAAGGCGACTCGGGACTAGTCCTCACCACCGACCCGAAGCCCCGCCTCCGGTGGACCGTCGAGCTCCATGCTCGCTTTGTCGATGCAGTCACCCAGCTTGGAGGCCCTGATAAAGCAACCCCAAAAACGATCATGAGGGTTATGGGAGTGAAGGGTCTTACTCTTTACCACCTCAAAAGCCACCTTCAGAAATTTAGGCTTGGGAAGCAGCCTCATAAAGAATTCGCCGATCACTCGATGAAGCATGCTTCTTCGTTCGAACTTCAACGAAACGTAGCATCTTCATCTAATGTTATTGGCCGCAATAAGAACGATAACTCGCACATGGTGGATGCAATTAAGATGCAGATGGAGGTGCAGAGAAGACTGCATGAACAACTAGAGGTGCAAAGACACCTTCAACTGAGAATCGAAGCACAAGGGAAGTACATGCAAAATATACTAGAAAAGGCTTGTCAAACTCTTGTCGGCGAGAATATGGGCTGTGGAGGATCGTCCTTTAAGACAATGGTTCCATGTTTTCAAGACCTGAACATTTGTGGAGGAGACCAGCTTGATCTGGAGCAAAATATAGATAATTTTCTTCCGGTCAATGACGATATTTGTCTCGAAAAGAAGGCAGGAAGCTCGTATAGCAATGGTGGAAAGAGCCCTCTTCTTTGGTCAGATGATCTTCAACTTCACATGTTGGGGCCGACGACAACTTCTTCCGGTGGTTTTAAAGGAGAAAGAGTCGTCGATCTAGACTCCATTTCTGATATCTATGACACAAAGCCATAG 843 46.14 MFHPKKPSTMNSHDQRSSMCVQGDSGLVLTTDPKPRLRWTVELHARFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPHKEFADHSMKHASSFELQRNVASSSNVIGRNKNDNSHMVDAIKMQMEVQRRLHEQLEVQRHLQLRIEAQGKYMQNILEKACQTLVGENMGCGGSSFKTMVPCFQDLNICGGDQLDLEQNIDNFLPVNDDICLEKKAGSSYSNGGKSPLLWSDDLQLHMLGPTTTSSGGFKGERVVDLDSISDIYDTKP 280
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 3575195 3576558 - Bda027237.1 Bda14g00491 20542

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda14g00491 280 Gene3D - 33 91 - -
Bda14g00491 280 Pfam Myb-like DNA-binding domain 37 85 IPR001005 -
Bda14g00491 280 SUPERFAMILY Homeodomain-like 33 89 IPR009057 -
Bda14g00491 280 PANTHER MYB FAMILY TRANSCRIPTION FACTOR APL 1 251 - -
Bda14g00491 280 Pfam MYB-CC type transfactor, LHEQLE motif 130 175 IPR025756 -
Bda14g00491 280 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 34 89 IPR006447 GO:0003677
Bda14g00491 280 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 31 91 IPR017930 -
Bda14g00491 280 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 1 251 IPR044848 GO:0003700
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda14g00491 - - - vri:117908572 399.823
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda06g00227 Bda-Chr6:3844334 Bda14g00491 Bda-Chr14:3575195 1.50E-09 dispersed
Bda06g00233 Bda-Chr6:4119095 Bda14g00491 Bda-Chr14:3575195 2.12E-65 dispersed
Bda13g00487 Bda-Chr13:5755722 Bda14g00491 Bda-Chr14:3575195 1.62E-68 dispersed
Bda14g00491 Bda-Chr14:3575195 Bda11g00350 Bda-Chr11:3890043 7.00E-69 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bda11g00350 . 12 265 G2-like Transcription Factor Family AT3G24120 61.4 7.8e-76 280.8
Bda13g00487 . 12 310 G2-like Transcription Factor Family AT3G24120 53.3 3.5e-68 255.4
Bda14g00491 . 23 174 G2-like Transcription Factor Family AT3G24120 60.4 4.8e-41 165.2
Bda13g01813 . 1 248 G2-like Transcription Factor Family AT5G16560 51.1 9.3e-48 188.0
Bda01g02090 CCT 10 246 G2-like Transcription Factor Family AT1G25550 54.7 6.8e-58 221.1
Bda07g01528 CCT 13 245 G2-like Transcription Factor Family AT1G25550 58.6 1.4e-55 213.4
Bda07g01528 CCT 13 299 G2-like Transcription Factor Family AT1G68670 51.6 2.7e-67 252.7
Bda01g02090 CCT 10 279 G2-like Transcription Factor Family AT1G68670 53.2 2.5e-65 246.1
Bda07g01528 CCT 13 245 G2-like Transcription Factor Family AT3G25790 51.6 6.8e-44 174.5
Bda09g01515 . 1 269 G2-like Transcription Factor Family AT3G46640 52.6 1.5e-64 243.4
Bda11g00695 . 1 306 G2-like Transcription Factor Family AT5G05090 53.6 5.5e-73 271.2
Bda03g00582 . 1 308 G2-like Transcription Factor Family AT5G05090 51.6 9.1e-68 253.8
Bda11g00350 . 12 312 G2-like Transcription Factor Family AT4G13640 54.2 4.8e-62 235.0
Bda13g00487 . 12 310 G2-like Transcription Factor Family AT4G13640 54.6 1.2e-57 220.3
Bda11g00350 . 12 265 G2-like Transcription Factor Family AT3G24120 61.4 7.8e-76 280.8
Bda13g00487 . 12 310 G2-like Transcription Factor Family AT3G24120 53.3 3.5e-68 255.4
Bda14g00491 . 23 174 G2-like Transcription Factor Family AT3G24120 60.4 4.8e-41 165.2
Bda05g01256 . 45 274 G2-like Transcription Factor Family AT1G69580 51.7 5.9e-40 161.8
Bda14g00491 . 1 279 G2-like Transcription Factor Family AT1G79430 53.9 2.0e-70 263.1
Bda11g00350 . 24 200 G2-like Transcription Factor Family AT1G79430 56.4 4.5e-38 155.6
Bda13g00487 . 36 189 G2-like Transcription Factor Family AT1G79430 64.1 1.9e-36 150.2
Bda09g01572 . 56 269 G2-like Transcription Factor Family AT2G01060 68.7 6.2e-60 227.6
Bda11g00695 . 1 306 G2-like Transcription Factor Family AT3G10760 65.7 1.9e-94 342.8
Bda03g00582 . 1 308 G2-like Transcription Factor Family AT3G10760 64.8 3.3e-91 332.0
Bda11g00695 . 1 208 G2-like Transcription Factor Family AT2G40970 63.6 9.7e-64 240.4
Bda03g00582 . 1 208 G2-like Transcription Factor Family AT2G40970 64.6 2.6e-61 232.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001069 3 4 3 4 3 2 4 2 2 2 2 2 4 2 2 4 2 3 3 2 2 2 2 2 2 2 1 6 5 2 81
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17026 PF00249 Myb_DNA-binding 6.70E-06 CL0123 Bda TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda14g00491 Bda_Chr14 FPKM 15.173532 15.771147 13.347558 14.123814 9.039299 10.113078 10.142831 16.3125 16.588505