Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda14g00508 ATGACCAAAAAGGAGAAATTGCTTGCTGTCAAAACCACAACAAGTGTTGATGACGGTATAAATAACGCATTTCTGCTCGAGTTATTTACAATTATACTTGTTTTTAACTTCATTCTTCTTTTTGTTTCTCTAGCATTGCAGTTACTTGTCGAAAAGAGAATAACTGGACTTCCTGTGATAGATGATGACTGGAACCTGGTTGGTGTTATTTCAGATTATGATTTACTGGCACTTGACACTATATCAGGTAGTGAAATTGATGCCCAGCCTAGTAGGAAATTGATGCCCAACCTAACGGTTTTTACTAATACTTATTACTGGCAGAAATTTTTTGAGATACAAAGGCTTCTTAGCAAGGCCAATGGCGAAGTTGTGGGAGACTTGATGACACCTGCACCTCTTGTTGTTATTGAAACGACCAAGTTGGAAGATGCGGCCAGGTTGTTGCTTGAGACCCAGCATCATCGGTTGCCTGTTGTTGACAATGATGGAAAGCTGGTAGGCATCATCACGAGGGGAAACGTAGTTAAAGCTGCCCTCCAAATAAAACGCTCCAGAGATGATTCGATATGA 573 40.49 MTKKEKLLAVKTTTSVDDGINNAFLLELFTIILVFNFILLFVSLALQLLVEKRITGLPVIDDDWNLVGVISDYDLLALDTISGSEIDAQPSRKLMPNLTVFTNTYYWQKFFEIQRLLSKANGEVVGDLMTPAPLVVIETTKLEDAARLLLETQHHRLPVVDNDGKLVGIITRGNVVKAALQIKRSRDDSI 190
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 3703102 3705637 - Bda027253.1 Bda14g00508 20559

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda14g00508 190 Pfam CBS domain 45 77 IPR000644 -
Bda14g00508 190 Pfam CBS domain 125 178 IPR000644 -
Bda14g00508 190 SUPERFAMILY CBS-domain pair 45 178 IPR046342 -
Bda14g00508 190 PANTHER CBS DOMAIN-CONTAINING PROTEIN CBSX1, CHLOROPLASTIC 1 187 - -
Bda14g00508 190 ProSiteProfiles CBS domain profile. 129 189 IPR000644 -
Bda14g00508 190 Gene3D - 41 186 IPR046342 -
Bda14g00508 190 PANTHER CBS DOMAIN-CONTAINING PROTEIN CBSX2, CHLOROPLASTIC 1 187 - -
Bda14g00508 190 SMART cbs_1 36 80 IPR000644 -
Bda14g00508 190 SMART cbs_1 132 180 IPR000644 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda14g00508 - - - gra:105795233 196.438
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda11g01442 Bda-Chr11:19577856 Bda14g00508 Bda-Chr14:3703102 3.38E-63 dispersed
Bda14g00508 Bda-Chr14:3703102 Bda14g01254 Bda-Chr14:13109901 2.25E-57 dispersed
Bda14g00508 Bda-Chr14:3703102 Bda08g00878 Bda-Chr8:15841126 7.70E-06 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g383 Blo02g00825 . . . . . . . . Cmo11g01377 . . . . . Cpe04g00291 . Bhi05g01078 . . . . . . Cla02g00614 Cam02g0643 Cec02g0642 Cco02g0663 Clacu02g0647 Cmu02g0642 Cre02g0966 . . Cone3ag0986 Cone10ag1004 . Csa07g00746 . Cme01g00062 Blo04g00478 . . Bda14g00508 Bpe15g00904 . Bma03g00510 . . . . Cma11g01738 . . . Cpe14g00288 Cpe01g00430 . . . . . . . . . . . . . . . . Chy01g00065 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000579 5 3 4 3 4 3 5 3 3 3 3 3 5 3 3 5 3 3 5 3 3 3 3 3 3 3 3 3 8 2 106
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda14g00508 Bda_Chr14 FPKM 0.0 1.62487 0.0 4.321546 0.0 0.0 2.765548 0.0 0.0