Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bda14g00509 | ATGTCTCAGATTCAACCTCCGCCTCAAAATGTGATGTCCGGTGTCAATCAAGGGGCGATCGGTGGTCAGAACCAGTTTGTGACGACCTCTATGTATGTTGGAGATCTTGACCCGAATGTAACAGATTCGCAGCTCTACGACCTATTTAATCAGGTCGGTCAGGTAGTTTCTGTTCGGGTCTGCAGGGATTTGTCTACTCGACATTCGCTTGGTTATGGTTACGTCAACTATGGCAATCCGCAAGATGGTGCTAGGGCATTGGACGTTTTGAACTTTACACCTATCAATGGGAAACCCATCCGAGTAATGTATTCTCATCGCGACCCAAGCATCCGAAAAAGTGGTGCTGGAAATATCTTTATTAAGAATTTAGACAAGGCGATCGACCACAAAGCATTACAAGAGACATTTTCCGCATTTGGGAATGTACTCTCCTGTAAGGTGGCCACAAACCAATTTGGCCAGTCAAAAGGTTATGGTTTTGTTCAATTTGATAGTGAGGAATTTGCCCAAAAAGCTATTGAGAAGTTGAATGGAATGCTATTGAATGACAAACAAGTCTTTGTGGGGCCTTTCCTTCGCAAACAGGAAAGAGATAGTTCTGTCGAAAAATCAAAATTTAACAATGTGTATTTAAAAAATCTCTCTGAAGAAACCACTGAAGAAGATCTGCAAAAGATTTTTGGTGAATTTGGTCCCATCACAAGCATAGCAGTGATGAGAGATGAGGATGGTAAATCAAAGTGCTTTGGGTTTGTGAACTTTGAGAATCCAGATGATGCAGCTAGGTCTGTTGAGGCACTTAATGGAAAGAAGTTTGATGGTAAGGAGTGGTATGTTGGGAAAGCCCAGAAGAAATCTGAGAGAGAAAATGAACTAAAAGCTCAATTTGAAAGTAGCTTGAAAGAAGCAGCTGACAAGTATCAGGGAGCAAACTTATATGTTAAAAATTTAGATGATAGTATCCACGATGACAAGCTTAAGGAGTTGTTCTCTCCATTTGGCACAATCACCTCTTGCAAGGTTATGCAAGACCCTAATGGAATAAGTAAGGGATCTGGGTTTGTGGCATTTTCCTCTTCTGAAGAGGCTTCTAGAGCTCTCTTGGAGATGAATGGAAAAATGGTCGCGAGCAAACCTCTGTATGTTGCACCTGCACAGAGGAAAGAAGAAAGAAAGCTCAGACTGCAAGCACAATTTTCTCAGATGCAGCCTGTAGCAATGCCACCTTCTGTCACCCCCCGGATGCCAATGTATCCAAATAATAGTCCTGGTCTTAGCCAACAAATATTCTATGGTCCGGCTCCGCCAGCTATAATTCCTTCCCAGGCTGGCTTTGGTTTTCAGCAACAAATTGTTCCAGGCATGAGGCCTGGTGTGGCTCCAATGGCAAATTTTTTTGTGCCAATGGTTCAACAGGGACCGCAAGGACGCCCTGGCAGCAGACGATCTGGTGCTCTCCAGCAGACCCAGCAGCCTGTTCCACTAATGCAGCAGCAGATGGTACCAAGGGGGCGTGTGTACCGTTATCCTCCTGGCCGTGCCCTGCCTGATGTGCCTATGCCTGGCATTGCTGGAGGCATGTTTTCGGTTCCATATGACATGGGTGGCATGCCACTGCGTGATCCAACTCTCTCTCAGCCAATTCCAATTGGTGCTTTGGCTTCAGCTCTAGCAAATGCTAGTCCAGATCAGCAGAGACCTATGCTGGGTGAGAGTCTTTATCCACTCGTGGAGCAGCTCGAGCCTGAAAATGCTGCTAAGGTGACTGGAATGCTTCTCGAAATGGATCAGACAGAAGTCTTACATTTGCTGGAGTCACCAGAAGCTCTGAAAGCCAAGGTGGCTGAGGCTATGGAGGTTCTGAGAAATGTTGCTCAGCAGCAGATTGGAAATGCAGCTGATCAGTTACTCTCCTTCTCTCTCAACGACAACCTGGATTCCTGA | 1947 | 45.45 | MSQIQPPPQNVMSGVNQGAIGGQNQFVTTSMYVGDLDPNVTDSQLYDLFNQVGQVVSVRVCRDLSTRHSLGYGYVNYGNPQDGARALDVLNFTPINGKPIRVMYSHRDPSIRKSGAGNIFIKNLDKAIDHKALQETFSAFGNVLSCKVATNQFGQSKGYGFVQFDSEEFAQKAIEKLNGMLLNDKQVFVGPFLRKQERDSSVEKSKFNNVYLKNLSEETTEEDLQKIFGEFGPITSIAVMRDEDGKSKCFGFVNFENPDDAARSVEALNGKKFDGKEWYVGKAQKKSERENELKAQFESSLKEAADKYQGANLYVKNLDDSIHDDKLKELFSPFGTITSCKVMQDPNGISKGSGFVAFSSSEEASRALLEMNGKMVASKPLYVAPAQRKEERKLRLQAQFSQMQPVAMPPSVTPRMPMYPNNSPGLSQQIFYGPAPPAIIPSQAGFGFQQQIVPGMRPGVAPMANFFVPMVQQGPQGRPGSRRSGALQQTQQPVPLMQQQMVPRGRVYRYPPGRALPDVPMPGIAGGMFSVPYDMGGMPLRDPTLSQPIPIGALASALANASPDQQRPMLGESLYPLVEQLEPENAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVAQQQIGNAADQLLSFSLNDNLDS | 648 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
14 | 3707904 | 3712195 | + | Bda027254.1 | Bda14g00509 | 20560 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bda14g00509 | 648 | CDD | RRM1_I_PABPs | 30 | 109 | - | - | |
Bda14g00509 | 648 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 210 | 278 | IPR000504 | GO:0003723 | |
Bda14g00509 | 648 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 119 | 186 | IPR000504 | GO:0003723 | |
Bda14g00509 | 648 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 32 | 101 | IPR000504 | GO:0003723 | |
Bda14g00509 | 648 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 313 | 381 | IPR000504 | GO:0003723 | |
Bda14g00509 | 648 | SUPERFAMILY | PABC (PABP) domain | 491 | 636 | IPR036053 | GO:0003723 | |
Bda14g00509 | 648 | Gene3D | - | 22 | 117 | IPR012677 | - | |
Bda14g00509 | 648 | Gene3D | - | 193 | 295 | IPR012677 | - | |
Bda14g00509 | 648 | Gene3D | - | 296 | 399 | IPR012677 | - | |
Bda14g00509 | 648 | SMART | poly_2 | 562 | 625 | IPR002004 | GO:0003723 | |
Bda14g00509 | 648 | ProSiteProfiles | Poly(A)-binding protein C-terminal (PABC) domain profile. | 550 | 627 | IPR002004 | GO:0003723 | |
Bda14g00509 | 648 | Gene3D | - | 118 | 190 | IPR012677 | - | |
Bda14g00509 | 648 | TIGRFAM | PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family | 30 | 623 | IPR006515 | GO:0003723 | |
Bda14g00509 | 648 | CDD | RRM3_I_PABPs | 207 | 286 | - | - | |
Bda14g00509 | 648 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 29 | 107 | IPR000504 | GO:0003723 | |
Bda14g00509 | 648 | PANTHER | RNA BINDING PROTEIN | 18 | 632 | - | - | |
Bda14g00509 | 648 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 117 | 189 | IPR000504 | GO:0003723 | |
Bda14g00509 | 648 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 208 | 285 | IPR000504 | GO:0003723 | |
Bda14g00509 | 648 | SUPERFAMILY | RNA-binding domain, RBD | 29 | 198 | IPR035979 | GO:0003676 | |
Bda14g00509 | 648 | SMART | rrm1_1 | 118 | 190 | IPR000504 | GO:0003723 | |
Bda14g00509 | 648 | SMART | rrm1_1 | 312 | 384 | IPR000504 | GO:0003723 | |
Bda14g00509 | 648 | SMART | rrm1_1 | 209 | 281 | IPR000504 | GO:0003723 | |
Bda14g00509 | 648 | SMART | rrm1_1 | 30 | 103 | IPR000504 | GO:0003723 | |
Bda14g00509 | 648 | SUPERFAMILY | RNA-binding domain, RBD | 208 | 392 | IPR035979 | GO:0003676 | |
Bda14g00509 | 648 | CDD | RRM4_I_PABPs | 310 | 388 | - | - | |
Bda14g00509 | 648 | PANTHER | POLYADENYLATE-BINDING PROTEIN | 18 | 632 | - | - | |
Bda14g00509 | 648 | CDD | RRM2_I_PABPs | 115 | 191 | IPR045305 | - | |
Bda14g00509 | 648 | Gene3D | - | 546 | 629 | - | - | |
Bda14g00509 | 648 | SMART | rrm2_1 | 118 | 190 | IPR003954 | GO:0003676 | |
Bda14g00509 | 648 | SMART | rrm2_1 | 30 | 103 | IPR003954 | GO:0003676 | |
Bda14g00509 | 648 | SMART | rrm2_1 | 209 | 281 | IPR003954 | GO:0003676 | |
Bda14g00509 | 648 | SMART | rrm2_1 | 312 | 384 | IPR003954 | GO:0003676 | |
Bda14g00509 | 648 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 311 | 388 | IPR000504 | GO:0003723 | |
Bda14g00509 | 648 | Pfam | Poly-adenylate binding protein, unique domain | 558 | 622 | IPR002004 | GO:0003723 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Bda14g00509 | Bda15g00040 | BCT |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bda11g00858 | Bda-Chr11:8470077 | Bda14g00509 | Bda-Chr14:3707904 | 0 | dispersed | |
Bda14g00509 | Bda-Chr14:3707904 | Bda08g00827 | Bda-Chr8:12514962 | 8.40E-14 | dispersed | |
Bda07g00874 | Bda-Chr7:10204933 | Bda14g00509 | Bda-Chr14:3707904 | 1.05E-06 | transposed | |
Bda13g00408 | Bda-Chr13:5016288 | Bda14g00509 | Bda-Chr14:3707904 | 8.84E-13 | transposed | |
Bda14g00509 | Bda-Chr14:3707904 | Bda15g00040 | Bda-Chr15:1849466 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bda14g00509 | K13126 | - | jre:108988866 | 1041.95 |