Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda14g00509 ATGTCTCAGATTCAACCTCCGCCTCAAAATGTGATGTCCGGTGTCAATCAAGGGGCGATCGGTGGTCAGAACCAGTTTGTGACGACCTCTATGTATGTTGGAGATCTTGACCCGAATGTAACAGATTCGCAGCTCTACGACCTATTTAATCAGGTCGGTCAGGTAGTTTCTGTTCGGGTCTGCAGGGATTTGTCTACTCGACATTCGCTTGGTTATGGTTACGTCAACTATGGCAATCCGCAAGATGGTGCTAGGGCATTGGACGTTTTGAACTTTACACCTATCAATGGGAAACCCATCCGAGTAATGTATTCTCATCGCGACCCAAGCATCCGAAAAAGTGGTGCTGGAAATATCTTTATTAAGAATTTAGACAAGGCGATCGACCACAAAGCATTACAAGAGACATTTTCCGCATTTGGGAATGTACTCTCCTGTAAGGTGGCCACAAACCAATTTGGCCAGTCAAAAGGTTATGGTTTTGTTCAATTTGATAGTGAGGAATTTGCCCAAAAAGCTATTGAGAAGTTGAATGGAATGCTATTGAATGACAAACAAGTCTTTGTGGGGCCTTTCCTTCGCAAACAGGAAAGAGATAGTTCTGTCGAAAAATCAAAATTTAACAATGTGTATTTAAAAAATCTCTCTGAAGAAACCACTGAAGAAGATCTGCAAAAGATTTTTGGTGAATTTGGTCCCATCACAAGCATAGCAGTGATGAGAGATGAGGATGGTAAATCAAAGTGCTTTGGGTTTGTGAACTTTGAGAATCCAGATGATGCAGCTAGGTCTGTTGAGGCACTTAATGGAAAGAAGTTTGATGGTAAGGAGTGGTATGTTGGGAAAGCCCAGAAGAAATCTGAGAGAGAAAATGAACTAAAAGCTCAATTTGAAAGTAGCTTGAAAGAAGCAGCTGACAAGTATCAGGGAGCAAACTTATATGTTAAAAATTTAGATGATAGTATCCACGATGACAAGCTTAAGGAGTTGTTCTCTCCATTTGGCACAATCACCTCTTGCAAGGTTATGCAAGACCCTAATGGAATAAGTAAGGGATCTGGGTTTGTGGCATTTTCCTCTTCTGAAGAGGCTTCTAGAGCTCTCTTGGAGATGAATGGAAAAATGGTCGCGAGCAAACCTCTGTATGTTGCACCTGCACAGAGGAAAGAAGAAAGAAAGCTCAGACTGCAAGCACAATTTTCTCAGATGCAGCCTGTAGCAATGCCACCTTCTGTCACCCCCCGGATGCCAATGTATCCAAATAATAGTCCTGGTCTTAGCCAACAAATATTCTATGGTCCGGCTCCGCCAGCTATAATTCCTTCCCAGGCTGGCTTTGGTTTTCAGCAACAAATTGTTCCAGGCATGAGGCCTGGTGTGGCTCCAATGGCAAATTTTTTTGTGCCAATGGTTCAACAGGGACCGCAAGGACGCCCTGGCAGCAGACGATCTGGTGCTCTCCAGCAGACCCAGCAGCCTGTTCCACTAATGCAGCAGCAGATGGTACCAAGGGGGCGTGTGTACCGTTATCCTCCTGGCCGTGCCCTGCCTGATGTGCCTATGCCTGGCATTGCTGGAGGCATGTTTTCGGTTCCATATGACATGGGTGGCATGCCACTGCGTGATCCAACTCTCTCTCAGCCAATTCCAATTGGTGCTTTGGCTTCAGCTCTAGCAAATGCTAGTCCAGATCAGCAGAGACCTATGCTGGGTGAGAGTCTTTATCCACTCGTGGAGCAGCTCGAGCCTGAAAATGCTGCTAAGGTGACTGGAATGCTTCTCGAAATGGATCAGACAGAAGTCTTACATTTGCTGGAGTCACCAGAAGCTCTGAAAGCCAAGGTGGCTGAGGCTATGGAGGTTCTGAGAAATGTTGCTCAGCAGCAGATTGGAAATGCAGCTGATCAGTTACTCTCCTTCTCTCTCAACGACAACCTGGATTCCTGA 1947 45.45 MSQIQPPPQNVMSGVNQGAIGGQNQFVTTSMYVGDLDPNVTDSQLYDLFNQVGQVVSVRVCRDLSTRHSLGYGYVNYGNPQDGARALDVLNFTPINGKPIRVMYSHRDPSIRKSGAGNIFIKNLDKAIDHKALQETFSAFGNVLSCKVATNQFGQSKGYGFVQFDSEEFAQKAIEKLNGMLLNDKQVFVGPFLRKQERDSSVEKSKFNNVYLKNLSEETTEEDLQKIFGEFGPITSIAVMRDEDGKSKCFGFVNFENPDDAARSVEALNGKKFDGKEWYVGKAQKKSERENELKAQFESSLKEAADKYQGANLYVKNLDDSIHDDKLKELFSPFGTITSCKVMQDPNGISKGSGFVAFSSSEEASRALLEMNGKMVASKPLYVAPAQRKEERKLRLQAQFSQMQPVAMPPSVTPRMPMYPNNSPGLSQQIFYGPAPPAIIPSQAGFGFQQQIVPGMRPGVAPMANFFVPMVQQGPQGRPGSRRSGALQQTQQPVPLMQQQMVPRGRVYRYPPGRALPDVPMPGIAGGMFSVPYDMGGMPLRDPTLSQPIPIGALASALANASPDQQRPMLGESLYPLVEQLEPENAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVAQQQIGNAADQLLSFSLNDNLDS 648
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 3707904 3712195 + Bda027254.1 Bda14g00509 20560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda14g00509 648 CDD RRM1_I_PABPs 30 109 - -
Bda14g00509 648 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 210 278 IPR000504 GO:0003723
Bda14g00509 648 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 119 186 IPR000504 GO:0003723
Bda14g00509 648 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 32 101 IPR000504 GO:0003723
Bda14g00509 648 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 313 381 IPR000504 GO:0003723
Bda14g00509 648 SUPERFAMILY PABC (PABP) domain 491 636 IPR036053 GO:0003723
Bda14g00509 648 Gene3D - 22 117 IPR012677 -
Bda14g00509 648 Gene3D - 193 295 IPR012677 -
Bda14g00509 648 Gene3D - 296 399 IPR012677 -
Bda14g00509 648 SMART poly_2 562 625 IPR002004 GO:0003723
Bda14g00509 648 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 550 627 IPR002004 GO:0003723
Bda14g00509 648 Gene3D - 118 190 IPR012677 -
Bda14g00509 648 TIGRFAM PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family 30 623 IPR006515 GO:0003723
Bda14g00509 648 CDD RRM3_I_PABPs 207 286 - -
Bda14g00509 648 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 29 107 IPR000504 GO:0003723
Bda14g00509 648 PANTHER RNA BINDING PROTEIN 18 632 - -
Bda14g00509 648 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 117 189 IPR000504 GO:0003723
Bda14g00509 648 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 208 285 IPR000504 GO:0003723
Bda14g00509 648 SUPERFAMILY RNA-binding domain, RBD 29 198 IPR035979 GO:0003676
Bda14g00509 648 SMART rrm1_1 118 190 IPR000504 GO:0003723
Bda14g00509 648 SMART rrm1_1 312 384 IPR000504 GO:0003723
Bda14g00509 648 SMART rrm1_1 209 281 IPR000504 GO:0003723
Bda14g00509 648 SMART rrm1_1 30 103 IPR000504 GO:0003723
Bda14g00509 648 SUPERFAMILY RNA-binding domain, RBD 208 392 IPR035979 GO:0003676
Bda14g00509 648 CDD RRM4_I_PABPs 310 388 - -
Bda14g00509 648 PANTHER POLYADENYLATE-BINDING PROTEIN 18 632 - -
Bda14g00509 648 CDD RRM2_I_PABPs 115 191 IPR045305 -
Bda14g00509 648 Gene3D - 546 629 - -
Bda14g00509 648 SMART rrm2_1 118 190 IPR003954 GO:0003676
Bda14g00509 648 SMART rrm2_1 30 103 IPR003954 GO:0003676
Bda14g00509 648 SMART rrm2_1 209 281 IPR003954 GO:0003676
Bda14g00509 648 SMART rrm2_1 312 384 IPR003954 GO:0003676
Bda14g00509 648 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 311 388 IPR000504 GO:0003723
Bda14g00509 648 Pfam Poly-adenylate binding protein, unique domain 558 622 IPR002004 GO:0003723
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bda14g00509 Bda15g00040 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda11g00858 Bda-Chr11:8470077 Bda14g00509 Bda-Chr14:3707904 0 dispersed
Bda14g00509 Bda-Chr14:3707904 Bda08g00827 Bda-Chr8:12514962 8.40E-14 dispersed
Bda07g00874 Bda-Chr7:10204933 Bda14g00509 Bda-Chr14:3707904 1.05E-06 transposed
Bda13g00408 Bda-Chr13:5016288 Bda14g00509 Bda-Chr14:3707904 8.84E-13 transposed
Bda14g00509 Bda-Chr14:3707904 Bda15g00040 Bda-Chr15:1849466 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda14g00509 K13126 - jre:108988866 1041.95