Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda14g00534 ATGGAACTGATTAAAGACATTGCAGTATTAGAACAAGAAATTGTCTATTTGGAGCAAAATCTCCTGTCTCTGTATAGAAAAACGTATCTACGACATGTATCATCATTGTCGGCAATGGATACTAACCTTAAACTAGCTTCAGATTCTCCGGATTATGCAATGCGAGATGAAGAGAAGTTAGACCATTCTGGCATCCCTCCGTTTCATCGAAATTCAGGCTGTGATACACCAGAAGGCAATCATGGTTTGGAACCGAACGAACTGTTCAATTTCGACGCCCATCAAAGCTTTTCCTTGCTATCTTCTGATTCAGCATGTTCAGTCATAAACTCTCCTGTGTCACAGTCACTGGCTAAAGCTGTAGACACATACCATTCTCTGCCATTATCAATGATAGAGCAATCTGAACGTGGAGCTTCAAATATATTTGGGGAGCATATTCGAAACTATATCCCGCACGGAGCGAAGCAGACACCGAGTTGTATATCTGAAGAGATGATTAAGTGCATCTCTGCCATATACTGTGAACTTGCAGAACCAGGATTGATCCACCGTCATTACCACTCTTCTCCAATACCCTTTTCATCATCATTTTATGAGCGTTCTTCGCAAGATCGTATTGGTTTTAGAATCCCAAAAGTTGCCCACTTCGATAATCCTTTTCACAGCAGAGAATTCACCGGACCATACTGCAAAATGTTGAAAGTGAATTGGATTTCAAGAGATAGTCAGAGGTTGAAAGATATTGAAGACATGCTGCAAAATTTCAGGTTCCTTGCTTATCGCTTGGAAGAAATCGATCCGGCAAAGATGAAACACGAGGAAAAGCTAGCTTTCTGGATCAATGTCCATAACTCACTTGCCATGCATGCTCTTTTGGTTAATGGCATCCCAAAAAATAGTCTGAAAAGGATGTCTTTCCTTCTGAAGGCATCATACAACATTGGAGGCCTGCTTATGAGCATAGATTCAATACAAAGTTCAATTCTCGGATTACGCCTTCCTCGTCCCGGACAATGGTTGAAGCTTCTTTTTCCTCACAAATCAAAATTGAAGACATCAGATGCAGTAAAACACTATGCAATTGAAAGATCAGAACCGCTCTTGTATTTTGCGCTCTGTTCCGGACATGAATCCGACCCTGCGGTCCGAATATATACGGCAAAGGGAATATATGAAGAGCTGGAGGCTGCCAAAGAAGAGTATATTAAGTCCACACTCTGCCAACACAAGGAGCAGAAAATCCTTCTTCCAAAAATCGTCGACTCTTTTGCAAAAGACTCGGGTTTAAGCCCGGCCGAGTTGGTTGAGCGACTTTCACCTAACGTGGTAAGGAAGCACTGTCAAAACAAAAAACATGAGAAGGGTAGCATATATTGGATCCCTCACAGCTTCAGTTTTCAGTTTCTGCTATCGAAATCGCTCTTCACTTTCTGA 1437 41.75 MELIKDIAVLEQEIVYLEQNLLSLYRKTYLRHVSSLSAMDTNLKLASDSPDYAMRDEEKLDHSGIPPFHRNSGCDTPEGNHGLEPNELFNFDAHQSFSLLSSDSACSVINSPVSQSLAKAVDTYHSLPLSMIEQSERGASNIFGEHIRNYIPHGAKQTPSCISEEMIKCISAIYCELAEPGLIHRHYHSSPIPFSSSFYERSSQDRIGFRIPKVAHFDNPFHSREFTGPYCKMLKVNWISRDSQRLKDIEDMLQNFRFLAYRLEEIDPAKMKHEEKLAFWINVHNSLAMHALLVNGIPKNSLKRMSFLLKASYNIGGLLMSIDSIQSSILGLRLPRPGQWLKLLFPHKSKLKTSDAVKHYAIERSEPLLYFALCSGHESDPAVRIYTAKGIYEELEAAKEEYIKSTLCQHKEQKILLPKIVDSFAKDSGLSPAELVERLSPNVVRKHCQNKKHEKGSIYWIPHSFSFQFLLSKSLFTF 478
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 3859164 3861070 - Bda027280.1 Bda14g00534 20585

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda14g00534 478 PANTHER UNCHARACTERIZED 1 475 - -
Bda14g00534 478 Coils Coil 7 27 - -
Bda14g00534 478 Pfam Protein of unknown function, DUF547 269 403 IPR006869 -
Bda14g00534 478 PANTHER TERNARY COMPLEX FACTOR MIP1 LEUCINE-ZIPPER PROTEIN 1 475 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda14g00534 - - - zju:107435778 488.804
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda10g00305 Bda-Chr10:32260613 Bda14g00534 Bda-Chr14:3859164 4.80E-118 dispersed
Bda11g00942 Bda-Chr11:9208040 Bda14g00534 Bda-Chr14:3859164 6.14E-63 dispersed
Bda12g01023 Bda-Chr12:41939264 Bda14g00534 Bda-Chr14:3859164 6.64E-40 dispersed
Bda14g00534 Bda-Chr14:3859164 Bda14g00134 Bda-Chr14:921769 1.83E-29 dispersed
Bda14g00534 Bda-Chr14:3859164 Bda04g00311 Bda-Chr4:46738647 3.73E-127 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g543 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone12ag1128 Cone8ag1175 . . . Csa07g00820 . . Blo04g00500 . . Bda14g00534 . . Bma03g01401 . . . . . . . Car19g00488 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009608 1 2 0 1 0 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 3 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda14g00534 Bda_Chr14 FPKM 48.977421 56.516068 36.773422 41.260769 8.958201 5.433568 9.161089 35.643845 43.541897