Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda14g00535 ATGCTTTCCAGCTCAGAGGCGTTCTCAAAGAGAGCAGATTTGCTGGATAGTGATCTTGCTTTCGTTGCTGGGGCCACTGGAAAAGTTGGCTCGCGAACTGTAAGGTCACTTTTGAAACTTGGGTTTCGAGTAAGAGCTGGAGTAAGAAGTACTCAGAAGGCAGAGAATCTTGTTCAAAGTGTGAGGCAAATGACGCTCGACAGTGCTGTAGAAAGGCTTGAAATTGTGAAATGTGACTTGGAGAAACAAGATCAAATTGGAGCAGCAATTGGCAATGCGTCCATGGTTATTTGCTGTATTGGAGCAAGTGAGAAGGAGATTTTTGATATTTCTGGTCCTTATAGGATTGACTATCTGGCTACCAAAAATCTGATTGAAGCAGCATCTGCTGCCAAAGTCGGTCACTTTATTTTGCTTACGTCCCTGGGCACTAACAAGGTTGGATTTCCTGCTGCTATTCTCAATTTGTTTTGGGGAGTCCTCATCTGGAAAAGGAAGGCAGAAGAAGCATTGTTAGCTAGTGGGCTTCCTTATACCATAGTGAGACCTGGAGGCATGGAGCGGCCAACCGATGCTTTCAAGGAGACTCATAATCTTACTCTCTCACCAGAAGATACGTTATTTGGTGGTCTGGTGTCAAACCTTCAGGTGGCAGAGCTCATGGCATTCATGGCCAAAAATCCTGGTCTTTCATACTATAAAGTAGTTGAAGTAGTTGCAGAGACTACTGCGCCAAAGAGTCCCATGGAGGAACTTCTTGGGAACATTCCATCTCGAGATGTCATTTCTGTTGTTAAGGTTTGTTCTTTCCTTTGGTTTACTCAGCAAGAATCAAAACGTTCATTTAAAATTAGTCTTTTGAAAATTTGA 870 43.22 MLSSSEAFSKRADLLDSDLAFVAGATGKVGSRTVRSLLKLGFRVRAGVRSTQKAENLVQSVRQMTLDSAVERLEIVKCDLEKQDQIGAAIGNASMVICCIGASEKEIFDISGPYRIDYLATKNLIEAASAAKVGHFILLTSLGTNKVGFPAAILNLFWGVLIWKRKAEEALLASGLPYTIVRPGGMERPTDAFKETHNLTLSPEDTLFGGLVSNLQVAELMAFMAKNPGLSYYKVVEVVAETTAPKSPMEELLGNIPSRDVISVVKVCSFLWFTQQESKRSFKISLLKI 289
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 3866258 3869110 - Bda027281.1 Bda14g00535 20586

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda14g00535 289 Gene3D - 18 259 - -
Bda14g00535 289 PANTHER PROTEIN TIC 62, CHLOROPLASTIC 5 260 IPR044719 -
Bda14g00535 289 CDD SDR_a5 21 242 - -
Bda14g00535 289 Pfam NAD(P)H-binding 24 228 IPR016040 -
Bda14g00535 289 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 17 253 IPR036291 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda14g00535 - - - bhj:120077757 416.001
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda09g00328 Bda-Chr9:4214954 Bda14g00535 Bda-Chr14:3866258 2.35E-16 dispersed
Bda09g00834 Bda-Chr9:18650911 Bda14g00535 Bda-Chr14:3866258 5.85E-42 dispersed
Bda14g00535 Bda-Chr14:3866258 Bda14g00855 Bda-Chr14:6576826 5.05E-09 dispersed
Bda14g00535 Bda-Chr14:3866258 Bda09g00147 Bda-Chr9:2305087 7.95E-14 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g547 . . . . . . . . Cmo19g00657 . . . . . . . Cpe15g00520 . . . . . . . . . . . . . . . Cone8ag1176 . . . Csa07g00822 . . . . . Bda14g00535 . . Bma03g00535 . . . . . . . Car19g00490 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002707 3 2 3 1 1 2 1 1 2 2 1 2 1 2 2 2 2 2 2 1 2 2 2 2 1 2 1 4 4 2 57
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda14g00535 Bda_Chr14 FPKM 3.014862 3.193643 5.344372 5.329123 16.262691 14.854195 17.607668 0.950206 1.450188