Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda14g00541 ATGACGTCTCTGAAAAATGGGTTACTATGTCATGCCCAGTTCATTAAAGCAGTTCTTGAACCAACAATTTTTGCTTCTAATCAACTCATCAACTATTACGGAAACAATGGATTTCTTCGGGAAGCGCGCAAACTGTTTGACGAAATGTCTGAACGGAATGTTTTCTCTTGGAATGCTATAATTTCCGCTAACATTAAGGCTGGCGAGTTGGAAAATGCCCGTGCATTGTTTAATACGGCTCCTTTTAGAGACCTGGTTACTTATAACTCGATGTTAGCAGGCTACGTAAGCTGTCATGGGTGCGATGCTAGTGCCCTCGAGCTGTTTGTTGAAATGCAAAATGTAGTCAGAGTAGATGAGTTTAGTTTTACGACTATGCTTAATTTGATTGCCAAGCTATCAGTTGTTTCGATTGGAAGGCAATTGCATTCATCAATGGTGAAGACTGGAAATGATTTGAGTAAATTCGCTTTTAGCTCACTCATCGATATGTATTCTAAGTGTGGGAGTTTCGAAGACGTGTGCAAAGTATTTAATGGCCGAAGTGGAGTGATTGATGTGGTTTCGAAGAATGCCACGGTAGCAGCTTGTTGCAGAGAAGGAAACTTAGATATGGCCTTAAATATTTTCTGGAGTGAACCCGAGATTAATGATATTATATCATGGAACACGTTAATTTCTGGTTTTGAGCAGAATGGTTTTGAGGAAGAGTCGTTAAAGTTGTTTCTTCATATGGGTCAAACCAAATTCAAATGGAACGAACACACTTTCGCTAGTGTTTTGGGTGCTTGTTCGAGTTTGAGGAATTTGAAATTAGGAAAAGAGGTCCATACCTGGATTTTGAAGAAGAACCTAAACTGGAATCCATTCATAAGCAGTGGGCTTGTCGATGTTTACTGCAAATGCGGTAATATGAGGTATGCAGAGTCAGTTCATGCACAAATAGAAACAGAAAATTCATATTCAATTTCATCAATGATCGTGGGTTATTCGTCTCAAGGTAACATGGCAGAAGCTTTAAAACTTTTCGATTCCTTGGCTGAAAAGAATTCAGTTGTCTGGACTGCTTTATTTTCCGGGTATGTCAAACTGCAGCAATGTGAAGCTGTTTTTGAGCTTTTTAGTGAGTTTAGGACAAATGCAGCGTCTACGCCTGATGCTTTGATGCTCATTTGCGTTATTAGTGCCTGTGCAATACAAGCAGCCCTTGCTTTTGGGAAGCAAATTCATGCTTATGTCCTCAGAGTAGGAATTGAAATGGATAAGAAATTGGTCAGCGCATTGGTCGATATGTACTCCAAATGTGGAAATATAGCTTATCCTGAGAGAATTTTTCAAAGATTCACCGACTGTGATTTAGTTCTTTACAATGTGATGATAGCTGGTTATGCTCACCATGGGCATGAAAATGAAGCCGTTCAGCTTTTTGAGGAAATGGTAGGGAAAGGTATGAAACCCGACGAAATTACATTTGTTGGACTTCTTTCTGCGTGTCGACATAGTGGCTCAGTTGAATTGGGAGAAGAATTGTTTGATTTAATGTCAGAAAAGTATAATTTAATCCCTGAAATTGATCACTATGCTTGTATGATTGATCTATATGGAAGGAAAAATCAACTGGAGAAGGCAGTGGCCTTCATGAGAAAAATTCCCATTGATTTAGACACGGTAATTTGGGGGGCATTTTTAAACGCGTGTAGGATAAATGGGAAGGCAGATCTTGCAAAAATGGCAGAGGAGAGACTACTAAATACCGAAGGAGAAGTAGGTGCTCGTTATGTGCAGTTGGCAAATGCTTATGCTGCAGACGGAAATTGGGAAGAGATGGGAAGGATGAGGAGAAAGATGAGGGGAAAGGAGGTGAAGAAGATGGTTGGATGCAGTTTGGAAGCCATGATCGGGCGGAAAGACAGCCCCTTGATGAGGACCTCCTCGCAGGGACCTCTTCTTTGCAAATCGAGGGTCGGAGCCGCCATTGCTATCGGAATCCTTTTTGGCTGCGTCTTTGCCTTCTTGTTTCCCGATGGGCTTTTCCCCTCCAGTTTCCACTCAATTCGTGAATCTAAGCTCCTGAAATCTACAACCCTGGTTGGTTCAAGTGCCTGTGACTTATCAGAACAGATCAACATGTTAAAATCAGAGTTTGTGTCGGCCTCAGAGAAGAATGCTGAACTAAAAAAGCAGGTGAGGGAAATAACTGAAAAGCTTAAATTGGCCGAGCAAGGGGAAGATAACGCACAAAAACAGGTCCTTGCTTTGGGCATACAGAACAAAACAGGTTCTTTTGGTACAGTCAAAGGTTCAAGAACAAGCCCCTCTATTATCCCCGATGAGTCTGTAAACCCGAGATTAGCAAAGATATTAGAGAAGGTTGCCGTCAATCGAGAGCTTATAGTCGCTCTTGCAAATTCAAATGTGAAGGAAATGTTGGAAATTTGGTTCAGCAGCATCAAGAAAGTAGGCATACCCAATTATCTTGTTGTTGCTTTGGATGAAGAAATAGTTAAGCTGTGCAATTCAAAGGATATTCCAGTCTATAAGAGAGACCGTGATGAAGGAATTGATTCGATAGCAAGAACTGGGGGAAACCATGCCGTATCTGGGACAAAATTTAGCATTCTGAGGGAGTTTCTTCAGCTAGGATATAGTGTTCTTCTATCGGATGTTGATATTGTGTACTTGCAAAACCCTTTTCAGCATCTTCGTCGGGATTCAGATGTTGAATCGATGACTGATGGACATGATAATAGAACGGCTTACGGGTATGACGATGTCTTTGACGAACCTCAAATGGGTTGGGCACGATACGCACATACAATGCGGATTTGGGTTTATAACTCTGGTTTTTTCTACATCAGACCGACAATCCCATCAATTGAGCTTTTAGATCGGGTGGCCAATCGTTTATCTAAAGAGCAGAATGCTTGGGATCAAGCAGTTTTCAACGAGGAACTATTTTTTCCGTCTCATCCTAACTACGAGGGCCTTCATGCTTCGAGAAGAACTTTGGATTTCTATCTTTTTATGAACAGCAAGGTTCTCTTCAAAACTGTGAGGAAGGATGCTAATCTCCGGAACTTCAAACCAGTGATCATTCATGTAAATTACCATCCCGATAAGCTTCCGAGAATGAAAGCCATAGTCGAGTTCTATGTCAATGGAAACAAGGAAGCACTAAACCCGTTTCCTGATGGTTCAGACTGGTAA 3207 41.28 MTSLKNGLLCHAQFIKAVLEPTIFASNQLINYYGNNGFLREARKLFDEMSERNVFSWNAIISANIKAGELENARALFNTAPFRDLVTYNSMLAGYVSCHGCDASALELFVEMQNVVRVDEFSFTTMLNLIAKLSVVSIGRQLHSSMVKTGNDLSKFAFSSLIDMYSKCGSFEDVCKVFNGRSGVIDVVSKNATVAACCREGNLDMALNIFWSEPEINDIISWNTLISGFEQNGFEEESLKLFLHMGQTKFKWNEHTFASVLGACSSLRNLKLGKEVHTWILKKNLNWNPFISSGLVDVYCKCGNMRYAESVHAQIETENSYSISSMIVGYSSQGNMAEALKLFDSLAEKNSVVWTALFSGYVKLQQCEAVFELFSEFRTNAASTPDALMLICVISACAIQAALAFGKQIHAYVLRVGIEMDKKLVSALVDMYSKCGNIAYPERIFQRFTDCDLVLYNVMIAGYAHHGHENEAVQLFEEMVGKGMKPDEITFVGLLSACRHSGSVELGEELFDLMSEKYNLIPEIDHYACMIDLYGRKNQLEKAVAFMRKIPIDLDTVIWGAFLNACRINGKADLAKMAEERLLNTEGEVGARYVQLANAYAADGNWEEMGRMRRKMRGKEVKKMVGCSLEAMIGRKDSPLMRTSSQGPLLCKSRVGAAIAIGILFGCVFAFLFPDGLFPSSFHSIRESKLLKSTTLVGSSACDLSEQINMLKSEFVSASEKNAELKKQVREITEKLKLAEQGEDNAQKQVLALGIQNKTGSFGTVKGSRTSPSIIPDESVNPRLAKILEKVAVNRELIVALANSNVKEMLEIWFSSIKKVGIPNYLVVALDEEIVKLCNSKDIPVYKRDRDEGIDSIARTGGNHAVSGTKFSILREFLQLGYSVLLSDVDIVYLQNPFQHLRRDSDVESMTDGHDNRTAYGYDDVFDEPQMGWARYAHTMRIWVYNSGFFYIRPTIPSIELLDRVANRLSKEQNAWDQAVFNEELFFPSHPNYEGLHASRRTLDFYLFMNSKVLFKTVRKDANLRNFKPVIIHVNYHPDKLPRMKAIVEFYVNGNKEALNPFPDGSDW 1068
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 3953503 3958150 - Bda027287.2 Bda14g00541 20592

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda14g00541 1068 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 218 252 IPR002885 -
Bda14g00541 1068 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 319 353 IPR002885 -
Bda14g00541 1068 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 452 486 IPR002885 -
Bda14g00541 1068 Pfam PPR repeat family 452 498 IPR002885 -
Bda14g00541 1068 Pfam E motif 573 628 IPR046848 -
Bda14g00541 1068 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 22 56 IPR002885 -
Bda14g00541 1068 Gene3D Tetratricopeptide repeat domain 270 383 IPR011990 GO:0005515
Bda14g00541 1068 SUPERFAMILY Nucleotide-diphospho-sugar transferases 798 1033 IPR029044 -
Bda14g00541 1068 TIGRFAM PPR: pentatricopeptide repeat domain 27 54 IPR002885 -
Bda14g00541 1068 TIGRFAM PPR: pentatricopeptide repeat domain 454 488 IPR002885 -
Bda14g00541 1068 PANTHER GLYCOSYLTRANSFERASE 646 1068 - -
Bda14g00541 1068 PANTHER ARABINOSYLTRANSFERASE RRA3 646 1068 IPR044290 GO:0016757|GO:0080147
Bda14g00541 1068 Pfam Nucleotide-diphospho-sugar transferase 822 1041 IPR005069 -
Bda14g00541 1068 Gene3D Tetratricopeptide repeat domain 8 99 IPR011990 GO:0005515
Bda14g00541 1068 Gene3D Tetratricopeptide repeat domain 100 182 IPR011990 GO:0005515
Bda14g00541 1068 Gene3D Tetratricopeptide repeat domain 399 502 IPR011990 GO:0005515
Bda14g00541 1068 Gene3D Tetratricopeptide repeat domain 183 269 IPR011990 GO:0005515
Bda14g00541 1068 Gene3D Tetratricopeptide repeat domain 503 652 IPR011990 GO:0005515
Bda14g00541 1068 Pfam PPR repeat 27 54 IPR002885 -
Bda14g00541 1068 Pfam PPR repeat 352 378 IPR002885 -
Bda14g00541 1068 Pfam PPR repeat 55 78 IPR002885 -
Bda14g00541 1068 Pfam PPR repeat 157 179 IPR002885 -
Bda14g00541 1068 Pfam PPR repeat 324 350 IPR002885 -
Bda14g00541 1068 Pfam PPR repeat 220 245 IPR002885 -
Bda14g00541 1068 Pfam PPR repeat 527 549 IPR002885 -
Bda14g00541 1068 Pfam PPR repeat 295 316 IPR002885 -
Bda14g00541 1068 Pfam PPR repeat 86 113 IPR002885 -
Bda14g00541 1068 Pfam PPR repeat 191 210 IPR002885 -
Bda14g00541 1068 Coils Coil 708 749 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda14g00541 - - - cmo:107990873 874.004
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda09g00473 Bda-Chr9:6217844 Bda14g00541 Bda-Chr14:3953503 2.96E-13 dispersed
Bda14g00541 Bda-Chr14:3953503 Bda10g00193 Bda-Chr10:6760901 5.53E-34 dispersed
Bda06g00847 Bda-Chr6:11732868 Bda14g00541 Bda-Chr14:3953503 2.84E-06 transposed
Bda14g00541 Bda-Chr14:3953503 Bda08g01305 Bda-Chr8:52802691 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g563 . . . . . . . . Cmo19g00661 . . . . . . . Cpe15g00525 Bhi05g01201 . . . . . . Cla02g00543 . . . . . . . . . . . Csa07g00783 . Cme01g01469 . . . Bda14g00541 . . . . . . Cmo16g00372 . Cma19g00651 . Car19g00495 . . . . . . . . . . . . . . . . Lsi11g01072 . Chy01g00820 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013461 1 1 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 26
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda14g00541 Bda_Chr14 FPKM 0.505187 0.363243 1.486132 1.34695 5.538585 5.767963 6.702424 2.059742 2.381367