Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda14g00548 ATGCCATCCCGAAGAAGAACGCTCCTGAAAGTCATCATCCTCGGAGACAGCGGGGTGGGGAAGACCTCTTTGATGAACCAATATGTGAATAAGAAGTTCAGTAATCAATACAAGGCAACGATAGGAGCTGATTTTTTGACAAAAGAAGTGCAGTTTGAGGATAGGCTCTTTACTTTGCAGATTTGGGACACGGCAGGCCAGGAAAGATTCCAAAGCCTTGGTGTTGCTTTCTACCGAGGTGCTGATTGTTGTGTTCTAGTCTATGATGTTAACTCAATGAAATCATTTGACAACCTTAACAACTGGCGAGAAGAATTCCTCATTCAGGCAAGTCCTTCAGATCCAGAAAATTTTCCTTTTGTTGTTCTTGGAAACAAAGTTGATGTAGATGGTGGAAATAGTAGAGTGGTTTCGGAGAAAAAAGCTCGAGCTTGGTGTGCATCAAAAGGAAATATTCCATACTTCGAGACATCAGCTAAAGAAGGCATCAATGTGGAAGAGGCTTTCCAATGCATTGCCAAGAATGCGCTCAAAAGCGGGGAAGAGGAAGAGATTTATCTTCCGGATACTATTGACGTGGGAAGCAACAATCAGCCAAGATCAAGTGGATGTGAATGCTGA 621 42.83 MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKVDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEEEEIYLPDTIDVGSNNQPRSSGCEC 206
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 4012532 4015537 - Bda027294.1 Bda14g00548 20599

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda14g00548 206 ProSiteProfiles small GTPase Ras family profile. 3 206 IPR001806 GO:0003924|GO:0005525
Bda14g00548 206 SMART rab_sub_5 9 179 - -
Bda14g00548 206 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 5 181 IPR027417 -
Bda14g00548 206 CDD Rab7 9 182 - -
Bda14g00548 206 SMART ran_sub_2 14 201 - -
Bda14g00548 206 TIGRFAM small_GTP: small GTP-binding protein domain 9 172 IPR005225 GO:0005525
Bda14g00548 206 ProSiteProfiles small GTPase Rho family profile. 2 180 - -
Bda14g00548 206 SMART rho_sub_3 11 179 IPR001806 GO:0003924|GO:0005525
Bda14g00548 206 PANTHER RAS-RELATED PROTEIN RABG3F 1 206 - -
Bda14g00548 206 PRINTS Transforming protein P21 ras signature 9 30 - -
Bda14g00548 206 PRINTS Transforming protein P21 ras signature 32 48 - -
Bda14g00548 206 PRINTS Transforming protein P21 ras signature 50 72 - -
Bda14g00548 206 PRINTS Transforming protein P21 ras signature 116 129 - -
Bda14g00548 206 PRINTS Transforming protein P21 ras signature 154 176 - -
Bda14g00548 206 PANTHER RAB FAMILY 1 206 - -
Bda14g00548 206 Gene3D - 2 189 IPR027417 -
Bda14g00548 206 Pfam Ras family 10 177 IPR001806 GO:0003924|GO:0005525
Bda14g00548 206 ProSiteProfiles small GTPase Rab1 family profile. 3 206 - -
Bda14g00548 206 SMART ras_sub_4 6 179 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda14g00548 K07897 RAB7A; Ras-related protein Rab-7A - csv:101218255 420.239
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda14g00548 Bda15g00017 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g02287 Bda-Chr1:59511068 Bda14g00548 Bda-Chr14:4012532 1.30E-53 dispersed
Bda08g00716 Bda-Chr8:7997681 Bda14g00548 Bda-Chr14:4012532 1.83E-68 dispersed
Bda10g00815 Bda-Chr10:42514565 Bda14g00548 Bda-Chr14:4012532 2.64E-138 dispersed
Bda11g01337 Bda-Chr11:14760064 Bda14g00548 Bda-Chr14:4012532 9.91E-15 dispersed
Bda11g01339 Bda-Chr11:14842397 Bda14g00548 Bda-Chr14:4012532 2.79E-83 dispersed
Bda14g00548 Bda-Chr14:4012532 Bda15g00017 Bda-Chr15:1325082 1.36E-140 dispersed
Bda14g00548 Bda-Chr14:4012532 Bda04g00867 Bda-Chr4:58474113 7.34E-140 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g580 . . . . . Bpe12g00077 . . Cmo19g00673 . . . . . . . Cpe15g00533 Bhi05g01223 Tan02g0809 . . Hepe02g0515 . . Cla02g00529 Cam02g0547 Cec02g0548 Cco02g0554 Clacu02g0548 Cmu02g0543 Cre02g0874 Cone12ag1146 Cone8ag1194 Cone3ag1157 Cone10ag1166 Lsi10g00673 . . Cme01g01430 Blo04g00507 Blo13g00556 Bda15g00017 Bda14g00548 . . . . . . . . Cma19g00659 . Car19g00502 . Cpe01g00429 . . . . . . . . . . . . . . Lsi11g01095 . Chy01g00795 Cme11g00207
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001330 4 2 4 2 2 2 4 2 2 2 2 2 4 2 2 4 2 4 2 2 2 3 2 1 2 1 2 4 3 2 74
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda14g00548 Bda_Chr14 FPKM 11.097979 11.177614 12.194152 14.427816 19.531792 19.2206 20.640139 21.77939 21.569595