Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda14g00550 ATGTCAGTTACTGAGCTGAAGAAGCGCCGTGCGGCGGCTATCGAGACAGTGAACGTCCTCAGAGACCTCTTGAAGCGGAAGCGGAACACTTTCCTCGACACTGATGTTGCGGAGTATGCAAGGTCGCAAGGAAAGAATCCTGTCTGCTTCGGACCAACGGATCTAGTGTGCTGCAGAACGTTGCAGGGTCATTCAGGAAAAGTATATTCACTGGACTGGACTCCAGATAGGAATAGAATTGTCAGTGCATCTCAAGATGGAAGGTTAATTGTGTGGAATTCTCTCACCAGCCAAAAGATCCATGCTATAAAACTGCCTTGCCCATGGATCATGACTTGTTCTTTCTCGCCTTCTGGTCAGTCCGTTTATCATGGTCTTGATAGTGTTTGCTCAATCATCAACCTGAATTCCCTCACCGATATGGATGGGAATCTACCGGTCGCGAAAGTGCTTAGCGGGCATAAAGGTTATGTTTCGGCCTGTCAATATGTTCCAGATGAGGATACTCACCTCATAACCAGTTCCGGTGACCATACATGTATTTTATGGGATATTACTACTGGACTTAGAACGTCTGTTTTTGGAGGTGAATTTCAGTCTGGGCACACTGCAGACGTGTTGAGTGTCTCAATTAATGGGTCCAACTCAAGAATGTTCTTATCTGGTTCATGTGATGGAACTGTGCGATTATGGGACACTCGTGCAGCAAGTCGAGCTGTGCAGATATATTATGGGAACGATGTTGATGTAAATACTGTGAAGTTCTTTCCAGATGGTAACAGATTTGGAACGGGCTCAGATGATGGTACTATCAGATTGTTTGACACCAGGACTGGACACCTACTCCAAGTGTACCATCAACAGCATATTGATAATCATTCGCCGCCTGTAACCTCCGTTGCATTCTCCATATCAGGAAGACTTCTGTTTGCTGGATATACGAATGGTGATTGTTATGTGTGGGACACTCTTTTAGCTAAGGTGGTTTTGAACCTGGGATCTCTTCAAAACTCACATGAAGGACGGATAAGCTGTTTGGGATTGTCTGCTGACGGAAGTGCCTTGTGTACCGGTAGTTGGGATTCAAATCTCAAGGTG 1098 45.54 MSVTELKKRRAAAIETVNVLRDLLKRKRNTFLDTDVAEYARSQGKNPVCFGPTDLVCCRTLQGHSGKVYSLDWTPDRNRIVSASQDGRLIVWNSLTSQKIHAIKLPCPWIMTCSFSPSGQSVYHGLDSVCSIINLNSLTDMDGNLPVAKVLSGHKGYVSACQYVPDEDTHLITSSGDHTCILWDITTGLRTSVFGGEFQSGHTADVLSVSINGSNSRMFLSGSCDGTVRLWDTRAASRAVQIYYGNDVDVNTVKFFPDGNRFGTGSDDGTIRLFDTRTGHLLQVYHQQHIDNHSPPVTSVAFSISGRLLFAGYTNGDCYVWDTLLAKVVLNLGSLQNSHEGRISCLGLSADGSALCTGSWDSNLKV 366
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 4023619 4031462 - Bda033938 Bda14g00550 20601

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda14g00550 366 Gene3D - 11 366 IPR015943 GO:0005515
Bda14g00550 366 Pfam WD domain, G-beta repeat 240 275 IPR001680 GO:0005515
Bda14g00550 366 Pfam WD domain, G-beta repeat 200 232 IPR001680 GO:0005515
Bda14g00550 366 Pfam WD domain, G-beta repeat 149 184 IPR001680 GO:0005515
Bda14g00550 366 Pfam WD domain, G-beta repeat 57 93 IPR001680 GO:0005515
Bda14g00550 366 Pfam WD domain, G-beta repeat 287 322 IPR001680 GO:0005515
Bda14g00550 366 ProSitePatterns Trp-Asp (WD) repeats signature. 171 185 IPR019775 -
Bda14g00550 366 CDD WD40 57 366 - -
Bda14g00550 366 PANTHER GUANINE NUCLEOTIDE-BINDING PROTEIN, BETA SUBUNIT-RELATED 1 366 - -
Bda14g00550 366 PIRSF GNBP_B 1 366 - -
Bda14g00550 366 ProSiteProfiles Trp-Asp (WD) repeats profile. 199 241 IPR001680 GO:0005515
Bda14g00550 366 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 199 234 - -
Bda14g00550 366 ProSiteProfiles Trp-Asp (WD) repeats profile. 243 284 IPR001680 GO:0005515
Bda14g00550 366 ProSiteProfiles Trp-Asp (WD) repeats profile. 61 102 IPR001680 GO:0005515
Bda14g00550 366 SMART WD40_4 191 232 IPR001680 GO:0005515
Bda14g00550 366 SMART WD40_4 328 363 IPR001680 GO:0005515
Bda14g00550 366 SMART WD40_4 96 134 IPR001680 GO:0005515
Bda14g00550 366 SMART WD40_4 278 322 IPR001680 GO:0005515
Bda14g00550 366 SMART WD40_4 144 184 IPR001680 GO:0005515
Bda14g00550 366 SMART WD40_4 236 275 IPR001680 GO:0005515
Bda14g00550 366 SMART WD40_4 54 93 IPR001680 GO:0005515
Bda14g00550 366 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 61 93 - -
Bda14g00550 366 PRINTS Beta G protein (transducin) signature 99 114 IPR001632 -
Bda14g00550 366 PRINTS Beta G protein (transducin) signature 80 94 IPR001632 -
Bda14g00550 366 PRINTS Beta G protein (transducin) signature 61 77 IPR001632 -
Bda14g00550 366 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 336 366 - -
Bda14g00550 366 ProSiteProfiles Trp-Asp (WD) repeats profile. 151 193 IPR001680 GO:0005515
Bda14g00550 366 PRINTS G protein beta WD-40 repeat signature 171 185 IPR020472 -
Bda14g00550 366 PRINTS G protein beta WD-40 repeat signature 219 233 IPR020472 -
Bda14g00550 366 PRINTS G protein beta WD-40 repeat signature 80 94 IPR020472 -
Bda14g00550 366 ProSiteProfiles Trp-Asp (WD) repeats profile. 290 322 IPR001680 GO:0005515
Bda14g00550 366 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 290 322 - -
Bda14g00550 366 SUPERFAMILY WD40 repeat-like 32 366 IPR036322 GO:0005515
Bda14g00550 366 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 243 279 - -
Bda14g00550 366 ProSiteProfiles Trp-Asp (WD) repeats profile. 336 366 IPR001680 GO:0005515
Bda14g00550 366 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 151 188 - -
Bda14g00550 366 PANTHER GUANINE NUCLEOTIDE-BINDING PROTEIN BETA G PROTEIN BETA 1 366 IPR016346 GO:0007165
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda14g00550 K04536 GNB1; guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1 - cpap:110813734 631.328
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda08g00926 Bda14g00550 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda08g00920 Bda-Chr8:16929839 Bda14g00550 Bda-Chr14:4023619 0 dispersed
Bda14g00550 Bda-Chr14:4023619 Bda05g00561 Bda-Chr5:53512719 9.73E-12 dispersed
Bda15g00699 Bda-Chr15:10427168 Bda14g00550 Bda-Chr14:4023619 1.49E-08 transposed
Bda14g00550 Bda-Chr14:4023619 Bda08g00926 Bda-Chr8:17053550 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g584 Blo02g00801 . . Bda08g00926 . . . . Cmo19g00675 . . . . . Sed05g2321 Cpe04g00124 Cpe15g00535 Bhi05g01225 Tan02g0806 Cmetu01g2025 . Hepe02g0513 . . Cla02g00527 Cam02g0545 Cec02g0546 Cco02g0552 Clacu02g0546 Cmu02g0541 Cre02g0872 Cone12ag1148 Cone8ag1196 . . . . . Cme01g01428 Blo04g00509 . . Bda14g00550 Bpe15g00870 . Bma03g00548 . . . . . Cma19g00661 . Car19g00504 . . . . . . . . . . . . . . . . Lsi11g01098 . Chy01g00793 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007608 3 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda14g00550 Bda_Chr14 FPKM 62.590683 70.546814 16.210209 16.517229 59.769203 60.826313 61.314415 7.827314 6.965508