Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda14g00552 ATGCTGTCTTCTGCCTGCTCACTACCACTCTTTTCTTCCCTCCCTCTTCCTCTCCGCTATGTTCATTCTCACTCCTCCTTCCCCAAACCTTCATGCTCTTCCATCCCTCATCACCTCCCCCGTCCGGACGATCAGTCCTCCGACAACCAATCCAACTCCGTTTTGGCCGATTCAATAGGCTTTAACCTCCGCACACAGAATTTTAAATCCACGTCCCTTCTTCTCCACCGCCTCTCTAACTCGCAGCTTCAAAATCCTCAGGATTTGGAACCTCCGGTATCCGAAGAAGAGAAGGTTAAGCTTCTGGAGCTTTCTCTTGTGAGAAAGCGCACTCCTCAATTTCCTGGTTCAATCTATGTCCAATCGCCGAGTGACTCCGACGTAGGTTCCTCTCTACCTCCTTTACAGAGCCTGTTTCAGTTTACGTCTACCGATGAAAATGATCAGAAGTTGATATTACGAGCCCTTAAGATTCGGCGCACGGTGATGGCTGAAATTTTCAAAGAAGCGATGCGGAAAGGAAAGTTCGGTATCACTTACACCACAAATATTCTCAGTTTCTCGCCCGATTTCATTGATTTCATGATGATTGAAGCAGCGGCTATGAAGCAGTCGCCTGAATTTTCACATGCAACCTTCAATCTTCGCGCCAAGACAGTCATTCAGGACTCAGGTGTTGTTCCTCTTATCAGGTGGTTGAAGCATAACTCCGTGTCATATCCCCAAATTGGGAAGCTTATTTGCATTTCAAACGGAAAACTTCATAACATACAGCGGCTTGCTGAATGGTTGAAGTCAGTTCATGTAAAGGGGGAAGTAGTTGGGGTTACGCTCACAAAAGCTGGGAGAAATATACTTGAACGTAGCAATGAGGAATTGGATGAAATTGTGGAGTACTTAGAGAAGAAAGGAGTGAGGAGGGATTGGATGGGATTTACCATAAGTCGATGTCCTCAGTTGTTGTCATACAACTTGGAAGAAGTGAAATCTCGTGTGGAATTTTACTTTAGTTTGGGTATGAATGAGAGAGACTTTGGCACTATGGTTTTTGATTACCCCAGGGCACTTGGCTTCTATACTCTAGAAGAGATGAATCGAAAGGTTAATTATATAAAAGAGTTTGGACTCAGTTCTGTGGATGTGGGAAAGTTACTGGCATTTAGACCACATCTAATGGGTTGTAGCATTGAGGAGAAATTGAAACCACTTGTCAAATATTTCTACTACCATGGTATTTCCCGAGATGGTATGAGGAGAATGCTAATGATTAAACCAATGATTTTCTCTCTTGATATGGAGACGACCATTGTACCAAAGGTACAATTCTTTAAAGACATTGGCGTTCGAGATGATGGCATTAGCAACATGCTTGTGAAGTTCCCTCCATTGCTAACTTACAACCTTTACAAGAAAATCCGACCTGTGGTCATTTTCTTGATGACAAAAGCTGGAGTCAGTGAGAAAAATATTGGAAAAGTTATAGCTTTAGGACCAGAACTTTTGGGCTGCAGTATAGTGCATAAGCTTGAGGTCAATGTGAAATACTTTCTATCACTCGGCATAAATTATCGGCAATTGGGTGAAATGATTGCTGATTTCCCAATGCTTCTAAGATATAATATAGATGTTCTTCGACCAAAGTATCGATATCTGCGGAGAACAATGGTTCGTCCTTTGCAAGATCTCATTGATTTTCCAAGGTTTTTCAGCTATTCTCTAGATGGACGTATAATTCCTAGGCACAAGGTTCTTATTGAGAATCGGGTAAATTTTAAATTAAGGTACATGCTGGCTTGTACTGATGAAGAGTTTGAGAAGAAGGTGATAGGAACCCTAGCCAATTCCAGAAAAATAACAAAGCCCTTAGTGTATTCCCCTTTTACCCCTATCTAG 1893 42.21 MLSSACSLPLFSSLPLPLRYVHSHSSFPKPSCSSIPHHLPRPDDQSSDNQSNSVLADSIGFNLRTQNFKSTSLLLHRLSNSQLQNPQDLEPPVSEEEKVKLLELSLVRKRTPQFPGSIYVQSPSDSDVGSSLPPLQSLFQFTSTDENDQKLILRALKIRRTVMAEIFKEAMRKGKFGITYTTNILSFSPDFIDFMMIEAAAMKQSPEFSHATFNLRAKTVIQDSGVVPLIRWLKHNSVSYPQIGKLICISNGKLHNIQRLAEWLKSVHVKGEVVGVTLTKAGRNILERSNEELDEIVEYLEKKGVRRDWMGFTISRCPQLLSYNLEEVKSRVEFYFSLGMNERDFGTMVFDYPRALGFYTLEEMNRKVNYIKEFGLSSVDVGKLLAFRPHLMGCSIEEKLKPLVKYFYYHGISRDGMRRMLMIKPMIFSLDMETTIVPKVQFFKDIGVRDDGISNMLVKFPPLLTYNLYKKIRPVVIFLMTKAGVSEKNIGKVIALGPELLGCSIVHKLEVNVKYFLSLGINYRQLGEMIADFPMLLRYNIDVLRPKYRYLRRTMVRPLQDLIDFPRFFSYSLDGRIIPRHKVLIENRVNFKLRYMLACTDEEFEKKVIGTLANSRKITKPLVYSPFTPI 630
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 4049291 4052335 - Bda033939 Bda14g00552 20603

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda14g00552 630 Gene3D Transcription termination factor 3, mitochondrial 373 614 IPR038538 -
Bda14g00552 630 PANTHER CGI-12 PROTEIN-RELATED 77 611 IPR003690 GO:0003690|GO:0006355
Bda14g00552 630 Coils Coil 283 303 - -
Bda14g00552 630 SMART mt_12 527 557 IPR003690 GO:0003690|GO:0006355
Bda14g00552 630 SMART mt_12 346 377 IPR003690 GO:0003690|GO:0006355
Bda14g00552 630 SMART mt_12 454 486 IPR003690 GO:0003690|GO:0006355
Bda14g00552 630 SMART mt_12 418 449 IPR003690 GO:0003690|GO:0006355
Bda14g00552 630 SMART mt_12 382 413 IPR003690 GO:0003690|GO:0006355
Bda14g00552 630 SMART mt_12 491 522 IPR003690 GO:0003690|GO:0006355
Bda14g00552 630 SMART mt_12 311 341 IPR003690 GO:0003690|GO:0006355
Bda14g00552 630 SMART mt_12 559 590 IPR003690 GO:0003690|GO:0006355
Bda14g00552 630 SMART mt_12 276 306 IPR003690 GO:0003690|GO:0006355
Bda14g00552 630 PANTHER TRANSCRIPTION TERMINATION FACTOR MTERF2, CHLOROPLASTIC 77 611 - -
Bda14g00552 630 MobiDBLite consensus disorder prediction 31 53 - -
Bda14g00552 630 Pfam mTERF 337 605 IPR003690 GO:0003690|GO:0006355
Bda14g00552 630 Pfam mTERF 255 335 IPR003690 GO:0003690|GO:0006355
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda14g00552 K15032 MTERFD; mTERF domain-containing protein, mitochondrial - csv:101220316 842.802
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda13g00401 Bda-Chr13:4964827 Bda14g00552 Bda-Chr14:4049291 6.41E-08 dispersed
Bda14g00538 Bda-Chr14:3878663 Bda14g00552 Bda-Chr14:4049291 8.03E-16 dispersed
Bda14g00552 Bda-Chr14:4049291 Bda15g00798 Bda-Chr15:11856134 5.51E-15 dispersed
Bda14g00552 Bda-Chr14:4049291 Bda13g01650 Bda-Chr13:39959524 4.17E-17 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g595 . . . . . . . . . . . . . . . . Cpe15g00541 Bhi05g01232 . . . . . . Cla02g00521 Cam02g0538 Cec02g0541 Cco02g0546 Clacu02g0539 Cmu02g0534 Cre02g0866 Cone12ag1152 . . . . . . Cme01g01421 Blo04g00511 . . Bda14g00552 Bpe15g00867 . Bma03g00551 . . . . . Cma19g00667 . Car19g00510 . . . . . . . . . . . . . . . . Lsi11g01104 . Chy01g00786 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012281 1 3 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 2 1 1 29
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17030 PF02536 mTERF 7.40E-60 No_clan Bda TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda14g00552 Bda_Chr14 FPKM 1.152618 1.533298 0.763313 0.77863 9.718981 11.838017 12.402925 0.49947 0.373858