Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda14g00578 ATGAATGATGTTGGAGAAGATAAAGCTGAGGATGAGATGGAAAATATGGCAGATTATACTGCTGAAGATGAGATGGACAACATGGAAAATGATATTGCGGATATGGAAGAGAGGAGTATCATGGGGGAAGAGATTGTAGGAGCAATTGATATGATTAATGTCACAGATGAGATTGTTGAGGCTGAAGATATGGATGTGTATGCACCTGATCCGACAGCAGATGAGGCTCAGGAAATGGAGCTGTTGGATGAGGTCGAGGAGGCTGATAGGGCTAGCACAGGGGGTAAGAGGAAGCGGGGAAAGAATTCTAAGGCTCCAGTAAGAACGCCATCAAAGAAGAAAGTTGAAGAGGATGTTTGCTTCATTTGCTTTGATGGGGGTGACCTTGTGCTCTGTGATCGCAGGGGTTGCCCTAAAGCATATCATCCTTCATGTGTCAACCGAGATGAAGCATTTTTTCGAGCTAAGGGTCGATGGAATTGTGGTTGGCACCTTTGTAGCAATTGTGGGAAAACTGCCAATTATATGTGTCTGACATGTACATTTTCCTTGTGCAAAAGTTGTATCAAGGATGCAATTATCTTCTGTGTGAGAGGGAACAAAGGCTTCTGTGAGACTTGCATGAAGACTGTCATGTTGATTGAAAAGAACGAGCATGGGAGCAGAGAAACGGGTCAAGTTGATTTTAATGACAAAAGTAGCTGGGAATATCTTTTTAAAGACTACTGGTCAGATGTAAAACAAAAGCTGTCTCTGACATTTGATGAGCTAACTCAGGCAAAGGTTCCTTGGAAAGGATCTGATATGCTAGCTAGTAAACAAGAATCTCCTCATGAACTTGATAATAAAGTAGATAGAGAATCAGATTCACATAGTTCTGGTAATCTTGATTCAAATGTCTCCAAAAGGAAAAAACCTAAGAAACTATTGAAGGCGCGCTCAAAAGAGAGGGATTTATCTCATTCTTCGAAAGTAACTAGTGTGGAAGGTATATCCACAGCTGAGAGGATTGAGTGGGCATCAAAAGAGCTCCTGGAATTTGTTATGCACATGAGGAATGGGGACAGATCGGTTTTATCTCAGTTTGATGTGCAGGCTCTCTTGCTAGAATATATTAAGAGAAACAAACTTCGCGATCCTCGTCGTAAAAGTCAAATTGTTTGTGATATAAGGTTGGAAACTTTGTTTGGCAAACCACGAGTGGGTCATTTTGAAATGTTAAAGCTACTTGAGTCCCACTTTCTTTTGAAAGAGGATGCCATGGCTGATGATCTTCAAGGGAGTGTGGTGGATACTGAGTCTAGTCAAATGGAGGTGGATGGAAACACTGATTCTGTAGTAAAGGCTGGTAAAGATAGGAAACGGAAGGGACGCAAAAAGAGTGATGGGAAAGGACTTCAATATAATGTTGATGATTATGCAGCCATTGATAGTCATAACATTAATTTGATTTACTTAAGACGTAATTTGGTTGAAGAACTTATTGATGATGTGGAAAATTTCCATAATAAGGTTGTTGGTACATTTGTTAGGATAAGGATATCAGGTAGTGCTCAAAAGCAAGATTTGTACAGGCTGGTCCAAGTTGTCGGTACATGCAAAGCGGGTGAACCTTATAAAGTTGGTAAAAAGATGACTAATATCTTGCTAGAGATTTTGAATTTAAACAAGACAGAGATCATATCATCGGATATCATATCAAATCAGGAGTTCACTGAGGATGAGTGCAAGCGGCTCCGCCAGAGCATCAAATGTGGACTTCTTAGTAGGCTGACTGTGGGTGACATTCAAGAGAAAGCGATGGCATTACAAGAAGTTAGGGTTAAAGATTACGTAATTGATAACATCATAACTTTCGTGGTCCATTTCTTATCTTCCACGTTCATCTTCTACCTGTTCGTATTGTTGGACAAAAGACCTGCGGACCATGCTACTGCTCATGCTCATAAAACTGAAGAAGATGGGCATACCTTTCCTCAACCTCGGACGTACAAACCAACACATTCCACAGGGGATGAGTTTAAAAGGAATGCGAGCCTTGTTGCATCAGGTGTAGCCAGAAATGTGAATAGAGTCTACAACCACATAAAAGAGAGCTTTGATGACATTCTTTATCCTTACCGAAGGCGACCTAAATAG 2139 40.77 MNDVGEDKAEDEMENMADYTAEDEMDNMENDIADMEERSIMGEEIVGAIDMINVTDEIVEAEDMDVYAPDPTADEAQEMELLDEVEEADRASTGGKRKRGKNSKAPVRTPSKKKVEEDVCFICFDGGDLVLCDRRGCPKAYHPSCVNRDEAFFRAKGRWNCGWHLCSNCGKTANYMCLTCTFSLCKSCIKDAIIFCVRGNKGFCETCMKTVMLIEKNEHGSRETGQVDFNDKSSWEYLFKDYWSDVKQKLSLTFDELTQAKVPWKGSDMLASKQESPHELDNKVDRESDSHSSGNLDSNVSKRKKPKKLLKARSKERDLSHSSKVTSVEGISTAERIEWASKELLEFVMHMRNGDRSVLSQFDVQALLLEYIKRNKLRDPRRKSQIVCDIRLETLFGKPRVGHFEMLKLLESHFLLKEDAMADDLQGSVVDTESSQMEVDGNTDSVVKAGKDRKRKGRKKSDGKGLQYNVDDYAAIDSHNINLIYLRRNLVEELIDDVENFHNKVVGTFVRIRISGSAQKQDLYRLVQVVGTCKAGEPYKVGKKMTNILLEILNLNKTEIISSDIISNQEFTEDECKRLRQSIKCGLLSRLTVGDIQEKAMALQEVRVKDYVIDNIITFVVHFLSSTFIFYLFVLLDKRPADHATAHAHKTEEDGHTFPQPRTYKPTHSTGDEFKRNASLVASGVARNVNRVYNHIKESFDDILYPYRRRPK 712
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 4421770 4432752 - Bda027330.2 Bda14g00578 20629

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda14g00578 712 SUPERFAMILY Plus3-like 476 605 IPR036128 GO:0003677
Bda14g00578 712 Pfam Plus-3 domain 480 583 IPR004343 GO:0003677
Bda14g00578 712 PANTHER UNCHARACTERIZED 8 616 - -
Bda14g00578 712 ProSiteProfiles SWIB/MDM2 domain profile. 333 416 IPR003121 -
Bda14g00578 712 MobiDBLite consensus disorder prediction 271 325 - -
Bda14g00578 712 CDD Bbox1 165 191 - -
Bda14g00578 712 Gene3D - 477 606 IPR036128 GO:0003677
Bda14g00578 712 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 107 217 IPR013083 -
Bda14g00578 712 SMART rtf1 475 585 IPR004343 GO:0003677
Bda14g00578 712 CDD SWIB-MDM2_like 339 414 - -
Bda14g00578 712 ProSiteProfiles Zinc finger PHD-type profile. 117 183 IPR019787 -
Bda14g00578 712 CDD PHD5_NSD 119 164 - -
Bda14g00578 712 MobiDBLite consensus disorder prediction 1 25 - -
Bda14g00578 712 MobiDBLite consensus disorder prediction 87 110 - -
Bda14g00578 712 SUPERFAMILY SWIB/MDM2 domain 335 415 IPR036885 -
Bda14g00578 712 SMART PHD_3 119 165 IPR001965 -
Bda14g00578 712 Pfam SWIB/MDM2 domain 341 414 IPR003121 -
Bda14g00578 712 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 19 8 616 - -
Bda14g00578 712 Gene3D SWIB/MDM2 domain 329 423 IPR036885 -
Bda14g00578 712 MobiDBLite consensus disorder prediction 432 463 - -
Bda14g00578 712 ProSiteProfiles Plus3 domain profile. 475 608 IPR004343 GO:0003677
Bda14g00578 712 ProSitePatterns Zinc finger PHD-type signature. 120 180 IPR019786 -
Bda14g00578 712 SUPERFAMILY FYVE/PHD zinc finger 116 172 IPR011011 -
Bda14g00578 712 Coils Coil 18 38 - -
Bda14g00578 712 MobiDBLite consensus disorder prediction 272 303 - -
Bda14g00578 712 MobiDBLite consensus disorder prediction 646 672 - -
Bda14g00578 712 SMART swib_2 334 419 IPR019835 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda14g00578 - - - csv:101218325 831.632
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda14g00578 Bda15g01067 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda11g01845 Bda-Chr11:53642575 Bda14g00578 Bda-Chr14:4421770 1.55E-180 dispersed
Bda12g00932 Bda-Chr12:40442666 Bda14g00578 Bda-Chr14:4421770 2.15E-06 dispersed
Bda14g00480 Bda-Chr14:3448302 Bda14g00578 Bda-Chr14:4421770 2.33E-24 dispersed
Bda14g00578 Bda-Chr14:4421770 Bda14g00990 Bda-Chr14:8054012 0 dispersed
Bda13g00545 Bda-Chr13:6446093 Bda14g00578 Bda-Chr14:4421770 1.52E-61 transposed
Bda14g00578 Bda-Chr14:4421770 Bda15g01067 Bda-Chr15:19845790 1.65E-34 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g36 . . . . . Bpe12g00093 . . . . Cma02g00363 Cma20g00810 Car02g00230 Car20g00694 . . . . . . . . . . . . . . . . . Cone12ag1183 Cone8ag1229 . Cone10ag1097 Lsi10g00417 . Chy11g00334 . Blo04g00537 Blo13g00535 Bda15g01067 Bda14g00578 Bpe15g00844 . Bma03g00572 . . Cmo02g00366 Cmo20g00818 . . . . Cpe16g00277 Cpe05g01293 Bhi10g01937 Tan05g1234 . . Hepe08g0973 . . . . . . . . . . Csa02g01310 . Cme11g00171
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007589 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 36
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17035 PF03126 Plus-3 2.00E-23 No_clan Bda TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda14g00578 Bda_Chr14 FPKM 0.0 0.0 0.0 0.0 9.569443 11.822368 10.638025 0.0 0.0