Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda14g00579 ATGAGTTTGGACAGCAGGAGTAGAAGTCGGAGTCGGAGCAGGAGCAGGAGCAGAAGCCCTTTGGATCGTAAGATCCGTTCTGATCGCTTTTCATATCGTGATGCACCATACAAGAGAGACTCCCATCGGGGTTTCAGTAGGGACAATCTTTGCAAGAACTGTAAGAGACCAGGCCACTTCGCTAGGGAATGCCCAAATGTTGCAGTTTGTCACAACTGTGGTCTTCCTGGGCACATTGCATCTGAATGCACAACAAAATCACTTTGTTGGAACTGCCGAGAACCTGGCCATGTGGCGAGCAACTGTCCAAATGAGGGTATTTGCCATACTTGTGGCAAGGCTGGGCATCGTGCCAGAGATTGCATAGCTCTCGCTCTGCCACCTGGAGATTTGAGGTTGTGCAACAACTGCTACAAACAGGGTCACATAGCAGCTGACTGCACTAATGACAAAGCCTGCAACAATTGTCGGAAAACAGGTCATTTGGCAAGAGATTGTCCAAACGAACCCATATGCAATTTGTGCAATGTCTCAGGCCATTTGGCTAGACAATGCCCCAAATCAAACGTTCTTGGTGACAGGGGTGGGGGTGTTAGAAGCAGCGGCTTTCGAGATATCATATGTAGGAACTGCCAGCAGCCAGGCCATATGAGCAGAGACTGCATGGGCCCCTTGATGATATGTCATAATTGCCAGGGACGAGGACACCTTGCATATGAGTGCCCTTCGGGAAGGTTTATGGACCGGTTTGCAAGGAGGTACTGA 765 49.67 MSLDSRSRSRSRSRSRSRSPLDRKIRSDRFSYRDAPYKRDSHRGFSRDNLCKNCKRPGHFARECPNVAVCHNCGLPGHIASECTTKSLCWNCREPGHVASNCPNEGICHTCGKAGHRARDCIALALPPGDLRLCNNCYKQGHIAADCTNDKACNNCRKTGHLARDCPNEPICNLCNVSGHLARQCPKSNVLGDRGGGVRSSGFRDIICRNCQQPGHMSRDCMGPLMICHNCQGRGHLAYECPSGRFMDRFARRY 254
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 4435624 4438044 - Bda027331.1 Bda14g00579 20630

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda14g00579 254 SUPERFAMILY Retrovirus zinc finger-like domains 201 245 IPR036875 GO:0003676|GO:0008270
Bda14g00579 254 ProSiteProfiles Zinc finger CCHC-type profile. 70 83 IPR001878 GO:0003676|GO:0008270
Bda14g00579 254 Gene3D - 6 85 - -
Bda14g00579 254 PANTHER - 7 254 - -
Bda14g00579 254 ProSiteProfiles Zinc finger CCHC-type profile. 89 104 IPR001878 GO:0003676|GO:0008270
Bda14g00579 254 SUPERFAMILY Retrovirus zinc finger-like domains 87 122 IPR036875 GO:0003676|GO:0008270
Bda14g00579 254 Gene3D - 200 245 - -
Bda14g00579 254 ProSiteProfiles Zinc finger CCHC-type profile. 172 187 IPR001878 GO:0003676|GO:0008270
Bda14g00579 254 ProSiteProfiles Zinc finger CCHC-type profile. 51 66 IPR001878 GO:0003676|GO:0008270
Bda14g00579 254 Gene3D - 86 106 - -
Bda14g00579 254 ProSiteProfiles Zinc finger CCHC-type profile. 108 121 IPR001878 GO:0003676|GO:0008270
Bda14g00579 254 SUPERFAMILY Retrovirus zinc finger-like domains 129 170 IPR036875 GO:0003676|GO:0008270
Bda14g00579 254 ProSiteProfiles Zinc finger CCHC-type profile. 134 149 IPR001878 GO:0003676|GO:0008270
Bda14g00579 254 ProSiteProfiles Zinc finger CCHC-type profile. 153 168 IPR001878 GO:0003676|GO:0008270
Bda14g00579 254 SMART c2hcfinal6 207 223 IPR001878 GO:0003676|GO:0008270
Bda14g00579 254 SMART c2hcfinal6 227 243 IPR001878 GO:0003676|GO:0008270
Bda14g00579 254 SMART c2hcfinal6 107 123 IPR001878 GO:0003676|GO:0008270
Bda14g00579 254 SMART c2hcfinal6 50 66 IPR001878 GO:0003676|GO:0008270
Bda14g00579 254 SMART c2hcfinal6 171 187 IPR001878 GO:0003676|GO:0008270
Bda14g00579 254 SMART c2hcfinal6 133 149 IPR001878 GO:0003676|GO:0008270
Bda14g00579 254 SMART c2hcfinal6 88 104 IPR001878 GO:0003676|GO:0008270
Bda14g00579 254 SMART c2hcfinal6 69 85 IPR001878 GO:0003676|GO:0008270
Bda14g00579 254 SMART c2hcfinal6 152 168 IPR001878 GO:0003676|GO:0008270
Bda14g00579 254 ProSiteProfiles Zinc finger CCHC-type profile. 228 243 IPR001878 GO:0003676|GO:0008270
Bda14g00579 254 Pfam Zinc knuckle 69 84 IPR001878 GO:0003676|GO:0008270
Bda14g00579 254 Pfam Zinc knuckle 50 66 IPR001878 GO:0003676|GO:0008270
Bda14g00579 254 Pfam Zinc knuckle 171 187 IPR001878 GO:0003676|GO:0008270
Bda14g00579 254 Pfam Zinc knuckle 207 221 IPR001878 GO:0003676|GO:0008270
Bda14g00579 254 Pfam Zinc knuckle 89 104 IPR001878 GO:0003676|GO:0008270
Bda14g00579 254 Pfam Zinc knuckle 107 121 IPR001878 GO:0003676|GO:0008270
Bda14g00579 254 Pfam Zinc knuckle 227 243 IPR001878 GO:0003676|GO:0008270
Bda14g00579 254 Pfam Zinc knuckle 133 149 IPR001878 GO:0003676|GO:0008270
Bda14g00579 254 Pfam Zinc knuckle 152 168 IPR001878 GO:0003676|GO:0008270
Bda14g00579 254 Gene3D - 152 199 - -
Bda14g00579 254 Gene3D - 107 151 - -
Bda14g00579 254 MobiDBLite consensus disorder prediction 1 27 - -
Bda14g00579 254 PANTHER OS10G0545300 PROTEIN 7 254 - -
Bda14g00579 254 SUPERFAMILY Retrovirus zinc finger-like domains 42 86 IPR036875 GO:0003676|GO:0008270
Bda14g00579 254 ProSiteProfiles Zinc finger CCHC-type profile. 208 221 IPR001878 GO:0003676|GO:0008270
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda14g00579 K09250 CNBP; cellular nucleic acid-binding protein - jre:108999359 507.294
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda14g00579 Bda15g01066 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda14g00579 Bda-Chr14:4435624 Bda15g01069 Bda-Chr15:19914472 4.71E-164 dispersed
Bda14g00579 Bda-Chr14:4435624 Bda15g01066 Bda-Chr15:19840773 4.71E-164 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g39 . . . . . Bpe12g00094 . . Cmo19g00702 . . . . . . Cpe04g00102 Cpe15g00562 Bhi05g01259 . . . . . . Cla02g00487 Cam02g0496 Cec02g0497 Cco02g0502 Clacu02g0500 Cmu02g0495 Cre02g0828 . . . . . Csa07g00035 . Cme01g01346 Blo04g00539 Blo13g00534 Bda15g01066 Bda14g00579 Bpe15g00842 . Bma03g00573 Bma08g00782 . . . . Cma19g00691 . . . . . . . . . . . . . . . . . . . . Chy01g00746 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004531 3 4 2 1 2 1 0 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 2 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda14g00579 Bda_Chr14 FPKM 44.852798 49.047592 77.145256 78.70401 75.311783 77.087463 76.966927 108.435432 109.148064