Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda14g00604 ATGGTTGTATCGGAGAATTCTAAGGGTTTGATTCTTGCGGTTGCGTCGAGCGCCTTTATTGGATCGAGTTTTATTTTGAAGAAGAAGGGACTCAAGCGCGCTGGTGCTACTGGGGCTCGGGCAGGAGTTGGAGGGTACACCTACTTGTTAGAGCCACTTTGGTGGGCAGGCATGGTGACAATGATTGTGGGAGAGATTGCAAACTTTGTTGCTTACGTTTATGCTCCAGCAGTTCTGGTTACTCCTTTAGGTGCATTAAGCATTATAATCAGTGCCATCTTGGCCCACTTATTGTTAAAGGAACGACTGCAGAAAATGGGTGTTCTGGGTTGCCTTTCATGTATTGTAGGATCAGTGGTAATTGTAATACATGCACCTGAAGAGTACATTCCTAGTTCTGTACAAGAAATTTGGGTTTTGGCTACTCAACCAGCCTTTTTAGTTTACATCATTGCTACACTTTCAATTGTGTTAGCCTTGATTTTGCACTTTGAACCACGCTGTGGGCAGACAAACATACTTGTTTACTTGGGAATATGTTCTTTTATGGGTTCGCTTACGGTTGTTAGCATAAAAGCTATTGGGATTGCAATTAAGCTAACTTTGGAGGGCGTAAGCCAATTAGCTTATCCTCAGACCTGGTTTTTTGTCTCAGTTGCTGTAATCTCTGTCGTCATGCAAATAAATTACTTGAACAAGGCCTTGGATACGTTTAATGCAGCAATCGTTTCACCAGTATATTATGTGATGTTTACAACTCTGACAATTATTGCTAGTGCTATAATGTTTAAGGACTGGGCTGATCAAAGTGCGAGTAGTATAGCCTCTGAATTATGTGGTTTCATCACTGTTCTTTCCGGAACCGTCATACTTCATTCAACCAGAGAACAGGAACTATCAGCTTCTGCACAAGGAGCTGTGACCTGGTACATTAGAGAAGAATCAGCGAAGAGTATTGAAGAAGGACATTTGATCACCATCTACAATTAA 990 41.72 MVVSENSKGLILAVASSAFIGSSFILKKKGLKRAGATGARAGVGGYTYLLEPLWWAGMVTMIVGEIANFVAYVYAPAVLVTPLGALSIIISAILAHLLLKERLQKMGVLGCLSCIVGSVVIVIHAPEEYIPSSVQEIWVLATQPAFLVYIIATLSIVLALILHFEPRCGQTNILVYLGICSFMGSLTVVSIKAIGIAIKLTLEGVSQLAYPQTWFFVSVAVISVVMQINYLNKALDTFNAAIVSPVYYVMFTTLTIIASAIMFKDWADQSASSIASELCGFITVLSGTVILHSTREQELSASAQGAVTWYIREESAKSIEEGHLITIYN 329
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 4557673 4560209 + Bda027358.1 Bda14g00604 20655

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda14g00604 329 PANTHER MAGNESIUM TRANSPORTER NIPA6-RELATED 2 328 - -
Bda14g00604 329 PANTHER UNCHARACTERIZED 2 328 IPR008521 GO:0015095|GO:0015693|GO:0016021
Bda14g00604 329 SUPERFAMILY Multidrug resistance efflux transporter EmrE 52 124 - -
Bda14g00604 329 Pfam Magnesium transporter NIPA 6 296 IPR008521 GO:0015095|GO:0015693|GO:0016021
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda14g00604 K22733 NIPA, SLC57A2S; magnesium transporter - cit:102623675 521.931
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda09g00325 Bda-Chr9:4114747 Bda14g00604 Bda-Chr14:4557673 1.96E-155 dispersed
Bda11g00339 Bda-Chr11:3802095 Bda14g00604 Bda-Chr14:4557673 1.48E-144 dispersed
Bda11g00847 Bda-Chr11:8350731 Bda14g00604 Bda-Chr14:4557673 4.84E-145 dispersed
Bda13g00484 Bda-Chr13:5736999 Bda14g00604 Bda-Chr14:4557673 2.44E-137 dispersed
Bda14g00604 Bda-Chr14:4557673 Bda03g00417 Bda-Chr3:3617756 3.58E-145 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g119 . . . . . . . . Cmo19g00735 Cmo11g01727 . . . . Sed05g2232 Cpe04g00579 Cpe15g00581 Bhi05g01740 Tan02g0707 Cmetu01g1169 . Hepe02g0441 . . Cla02g00443 Cam02g0452 Cec02g0450 Cco02g0469 Clacu02g0453 Cmu02g0448 Cre02g0781 Cone12ag1216 Cone8ag1268 . . . Csa07g00083 . Cme01g01281 Blo04g00555 . . Bda14g00604 Bpe15g00826 . Bma03g00595 . . . . Cma11g01391 . . Car19g00555 . . . . . . . . . . . . . . . . Lsi11g01183 . Chy01g00695 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000928 3 9 3 2 2 2 4 2 2 2 2 2 3 2 2 4 2 3 3 2 2 2 2 2 2 2 2 6 7 3 86
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda14g00604 Bda_Chr14 FPKM 2.788747 3.195889 4.241539 4.404924 4.781301 6.10922 5.681543 3.376734 3.609479