Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda14g00621 ATGAGCAACACGCTGATGCCAAATCTGTTGCAGAGGCTGAGACCTCTTGTGGGTTTCGAAGGTTGGGATTACTGTGTACTGTGGCATCTGAGCCAAGACCAAAGGTCTATTGAGTGGATAGACTGCTGCTGTGGTGGGACTGAAAACATGAATGAAAACGATGGAGAAAAACTTCATTTTCCTGTTTCTCCATTGTTTCTATGCAGGGATACTATATCTCAGCACCCTAGATCCAACCCTTGTCATCTTCTTGCTTTACTTCCGTCTTCTATGCCTCTAGATTCTGGTATTTACACCCAGACATTGTTGTCAAACCAGCCAAAATGGCTGAATCTCTCGTGTAGCTCAGATTCAACAGCAATCGAAGAAATCGCGGGGACTAAAGTTCTTATTCCAGTTGTATTCGGTATAATCGAGCTTTTCGTCACTAAACAAATATCGGAAGATCAACAAGTTATAGATTTTGTCACGTCTCAATGCAATATATCAATGGAGCAGGAGGCCATGGTTAATGTGGAAACAGATTTCTCAGTTGATCAAAAAGATTTGACGGATCAGACTAATCATTTTCACCCGCAACTTTCTCCGGCGACAACGTTGGAAAACTTGAATCTCAACTTTCTGCACCAATGCCATTTACTCTCAGATAGCAGAACAAAGAACATGACCTTTCATGAAGGTCTGCAAGAAATAGAGGCATTTCAAAAGTCCCTGATGCACAACACATCAGACATTCATATGCAGTTTATGGAGAATCTAGAAAATAAGGAATTGGAAGGTGATGATGATAAGGAGATAGTGAAGCTGAAGAATGGGAGGTTGGATTCATTATCAGACTGCAGTGATCAGATCGATGATGACGATGACGTAAAGTGCCATCGGAGAAACGAGCAAGAATACACAGCAAAGAACCTCATGGCAGAGAGAAAGAGAAGAAAGAAGCTTAACGATCGGCTTTACGAGCTTCGATCATTGGTACCAAAAATTTCAAAGCTGGACAGAGCTGCAATACTCGGAGATGCAATCGACTTCATAAAGGAATTGGAGCAGCAAGCGAAAGAACTAGAGGATGAACTTCAACAACGTTCAGACGATGAAGGTCCGAAATACACCATCGCCAACAATGGCAGCCATAGCATTGTACAAGCAGATTTTCTAGGCCAAAATGGAGCTACCCATTGGCCGAACCAGTCCGACAACCTTGGAGCTGCAAATAATTATGAATTCGGAACACAGAATAATGGAAAGACACTGAAACCAAATCAGGATTCTGAAAGTACGAATGAAAAATTGCGGCAGATGGAGCCTCAAGTGGAAGTAGCTCAAATAGGTGACAATGAATTCTTCGTTAAAGTATTCTGTGAGAAAAAGCGTGGAGCGTTTATGAGGTTGATGGAGGCCTTCAACTCTCTGGGCATGGAAGTATCAAATGCAAATGTGACAAGCTATAGAGGCCTGGTGTCTAATGTTTTCAAAGTCACGAAGAAAGACAGCGGAATGGTTCAAGCTGATCATGTGAGAGACTCGTTGCTCGAAATAACCCGGAATCCGACTAGAGTGTGGCCGAGAATGGACGCTAATTCTTCGGAAAATGGATGCTAA 1602 42.57 MSNTLMPNLLQRLRPLVGFEGWDYCVLWHLSQDQRSIEWIDCCCGGTENMNENDGEKLHFPVSPLFLCRDTISQHPRSNPCHLLALLPSSMPLDSGIYTQTLLSNQPKWLNLSCSSDSTAIEEIAGTKVLIPVVFGIIELFVTKQISEDQQVIDFVTSQCNISMEQEAMVNVETDFSVDQKDLTDQTNHFHPQLSPATTLENLNLNFLHQCHLLSDSRTKNMTFHEGLQEIEAFQKSLMHNTSDIHMQFMENLENKELEGDDDKEIVKLKNGRLDSLSDCSDQIDDDDDVKCHRRNEQEYTAKNLMAERKRRKKLNDRLYELRSLVPKISKLDRAAILGDAIDFIKELEQQAKELEDELQQRSDDEGPKYTIANNGSHSIVQADFLGQNGATHWPNQSDNLGAANNYEFGTQNNGKTLKPNQDSESTNEKLRQMEPQVEVAQIGDNEFFVKVFCEKKRGAFMRLMEAFNSLGMEVSNANVTSYRGLVSNVFKVTKKDSGMVQADHVRDSLLEITRNPTRVWPRMDANSSENGC 533
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 4668395 4673818 + Bda027376.1 Bda14g00621 20672

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda14g00621 533 Coils Coil 338 365 - -
Bda14g00621 533 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 10 158 IPR025610 -
Bda14g00621 533 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 92 522 - -
Bda14g00621 533 PANTHER TRANSCRIPTION FACTOR ABORTED MICROSPORES 92 522 - -
Bda14g00621 533 Pfam Helix-loop-helix DNA-binding domain 305 349 IPR011598 GO:0046983
Bda14g00621 533 SMART finulus 305 354 IPR011598 GO:0046983
Bda14g00621 533 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 299 348 IPR011598 GO:0046983
Bda14g00621 533 MobiDBLite consensus disorder prediction 355 374 - -
Bda14g00621 533 CDD bHLH_AtAMS_like 302 369 - -
Bda14g00621 533 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 299 362 IPR036638 GO:0046983
Bda14g00621 533 Gene3D - 288 364 IPR036638 GO:0046983
Bda14g00621 533 MobiDBLite consensus disorder prediction 408 429 - -
Bda14g00621 533 MobiDBLite consensus disorder prediction 408 422 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda14g00621 - - - qsu:111988783 580.482
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda11g01575 Bda-Chr11:48947578 Bda14g00621 Bda-Chr14:4668395 8.07E-20 dispersed
Bda14g00621 Bda-Chr14:4668395 Bda12g00021 Bda-Chr12:121931 1.78E-17 dispersed
Bda14g00621 Bda-Chr14:4668395 Bda09g00218 Bda-Chr9:3035966 2.93E-16 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g174 . . . . . . . . Cmo19g00756 Cmo11g01748 . . . . Sed05g2587 Cpe04g00600 Cpe15g00600 Bhi05g01697 Tan02g0669 Cmetu01g2019 . Hepe02g0417 . . Cla02g00417 Cam02g0427 Cec02g0425 Cco02g0443 Clacu02g0428 Cmu02g0423 Cre02g0757 . . . . . . . . Blo04g00576 . . Bda14g00621 Bpe15g00806 . Bma03g00615 . . . . Cma11g01372 Cma19g00746 . Car19g00575 . . . . . . . . . . . . . . . . Lsi11g01209 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006375 1 1 2 2 1 1 2 1 1 1 1 1 2 1 2 2 1 1 2 1 1 1 1 1 1 1 1 1 1 2 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17040 PF14215 bHLH-MYC_N 1.90E-18 CL0161 Bda TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda14g00621 Bda_Chr14 FPKM 14.786579 16.540237 6.851048 6.978192 13.469158 11.987911 13.384354 7.407185 7.037574