Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda14g00644 GATATGGGTGCCGAGGGCGATTCTAGTGAGTCTAGAACAGGCGGTGACGGTGGAGAAGAGGTCGCGGTTAATATTCGCTGCTCGAACGGGACGAAAATTACGGTGAGGACGTGCCTCGAGTCTACGGTTGGGGCCTTCAAAGTACTTATAGCTCAGAATTCTGATTTTCCTGCTGATCAGCAGCGATTGATCTACAAAGGCCGCATATTGAAGGATGACCAGACCCTGTATAGTTATGGTATGCAGGCAGATCATACAATTCACATGGTTCGTGGTTTTGCCCCTACTGCGTCAACGCCAACTGCTACAACCACTGATGCTAATACTGGAACTGCTAACAACACTGTGGGTGTCACAAGAGGTGTTGGTTCCACTGATGGGGGAGCTTTAGGGAATGCAACACCTTTATTTCCTGGACTTGGTTTCAACCCACTAGGTGGAGGTGCATCATCTGGTTTATTTGGAGCTGGTCTACCAGAATTCGAGCAAGTGCAGCAACAACTGACTCAGAACCCAAACATGATGAGGGAAATAATGAACATGCCTGCCATTCAGAATCTAATGAATAATCCTGATTTGATGCGAAATTTGATTATGAGCAATCCTCAAATGCGGGAAATTATTGATAGAAATCCAGAACTTGGTCATATTCTTAATGATCCTGGTGTTCTCAGGCAAACTTTAGAAGCTGCAAGGAACCCAGAGCTTATGCGGGAGATGATGAGAAACACCGACAGGGCGATGAGTAATATTGAATCAAGTCCCGAAGGATTCAATATGCTGAGGCGTATGTATGAAAATGTCCAAGAGCCATTTATGAATGCTACAGCAATGGCTGGAAACAACGGAAATGATTTGAGTTCAAACCCATTTGCAGCTCTGTTAGGAAACACTGCTGGGGCCCAAGCTCGGGCTGGGTCTAATAATACTTCAGTTGCTAGTACTGAAACAAACACAGGGACTACTGCTCCTAACATAAATCCACTTCCTAATCCGTGGGGTGGAGGAAATCAAGCAAACCCCACAAGGCCCAATCTGGCAGGGGAATCTAGGACTCCTAGTATTGGTAATTTAGGAGGACTTAGTCTTCCTGATATGGAGCAGATGGTGAGTGGTGGACCTGATTTGGCCATGTTGAATCAGTTTTTGCAAAACCCTGCAATATCACAGATGATGCAGAGCCTGCTATCTAATCCTCAATATATGAATGAGGTTCTCCGTCTCAACCCCCAGTTACGGAGTATGCCTGACATGAATCCTCAATTAAGAGAAATGATGCAAAATCCAGAGCTTCTTCGCCAGTTAACTAATCCCGAGACGATGCAGCAAATGCTATCACTACAGCAATCATTTTTATCTCAGCTCGGTCAACAACAATCAACTCAAGACCCAGCCCAAACAAGGACTACAGGAACTCCCAATAATGCCGGATTAGAGCTGATGATGAACATGTTTGGTGGTCTTGGAGCTGGTGGAATGACCGTTCCTAGCAATCCCAATGTCCCCCCAGAAGAACTATACGCAACACAGCTCTTGCAGCTTCAAGAGATGGGGTTTTTTGACACTCAAGAGAACATAAGGGCCCTTCGAGCCACCGCAGGGAACGTCCACGCTGCAGTAGAGCGACTTTTGGGGAATGCCGGGCCATAA 1650 46.24 DMGAEGDSSESRTGGDGGEEVAVNIRCSNGTKITVRTCLESTVGAFKVLIAQNSDFPADQQRLIYKGRILKDDQTLYSYGMQADHTIHMVRGFAPTASTPTATTTDANTGTANNTVGVTRGVGSTDGGALGNATPLFPGLGFNPLGGGASSGLFGAGLPEFEQVQQQLTQNPNMMREIMNMPAIQNLMNNPDLMRNLIMSNPQMREIIDRNPELGHILNDPGVLRQTLEAARNPELMREMMRNTDRAMSNIESSPEGFNMLRRMYENVQEPFMNATAMAGNNGNDLSSNPFAALLGNTAGAQARAGSNNTSVASTETNTGTTAPNINPLPNPWGGGNQANPTRPNLAGESRTPSIGNLGGLSLPDMEQMVSGGPDLAMLNQFLQNPAISQMMQSLLSNPQYMNEVLRLNPQLRSMPDMNPQLREMMQNPELLRQLTNPETMQQMLSLQQSFLSQLGQQQSTQDPAQTRTTGTPNNAGLELMMNMFGGLGAGGMTVPSNPNVPPEELYATQLLQLQEMGFFDTQENIRALRATAGNVHAAVERLLGNAGP 549
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 4830071 4833576 + Bda027401.1 Bda14g00644 20695

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda14g00644 549 Gene3D - 18 106 - -
Bda14g00644 549 SUPERFAMILY Ubiquitin-like 15 105 IPR029071 -
Bda14g00644 549 SUPERFAMILY UBA-like 503 545 IPR009060 GO:0005515
Bda14g00644 549 MobiDBLite consensus disorder prediction 1 20 - -
Bda14g00644 549 MobiDBLite consensus disorder prediction 452 479 - -
Bda14g00644 549 Gene3D - 489 549 - -
Bda14g00644 549 ProSiteProfiles Ubiquitin domain profile. 21 90 IPR000626 GO:0005515
Bda14g00644 549 MobiDBLite consensus disorder prediction 305 357 - -
Bda14g00644 549 MobiDBLite consensus disorder prediction 305 362 - -
Bda14g00644 549 MobiDBLite consensus disorder prediction 452 477 - -
Bda14g00644 549 Pfam Ubiquitin family 23 90 IPR000626 GO:0005515
Bda14g00644 549 SMART uba_6 507 545 IPR015940 -
Bda14g00644 549 SMART CBM 201 240 IPR006636 -
Bda14g00644 549 SMART CBM 373 405 IPR006636 -
Bda14g00644 549 SMART CBM 147 188 IPR006636 -
Bda14g00644 549 SMART CBM 409 444 IPR006636 -
Bda14g00644 549 SMART ubq_7 21 92 IPR000626 GO:0005515
Bda14g00644 549 Pfam UBA/TS-N domain 507 543 IPR015940 -
Bda14g00644 549 Gene3D - 196 254 - -
Bda14g00644 549 PANTHER UBIQUILIN 2 548 - -
Bda14g00644 549 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 502 546 IPR015940 -
Bda14g00644 549 PANTHER UBIQUITIN DOMAIN-CONTAINING PROTEIN DSK2A-RELATED 2 548 - -
Bda14g00644 549 CDD UBA_PLICs 507 545 - -
Bda14g00644 549 CDD Ubl_Dsk2p_like 21 93 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda14g00644 K04523 UBQLN, DSK2; ubiquilin - mnt:21390006 786.949
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda11g00078 Bda-Chr11:950732 Bda14g00644 Bda-Chr14:4830071 2.01E-08 dispersed
Bda14g00644 Bda-Chr14:4830071 Bda12g00892 Bda-Chr12:39674882 7.34E-06 dispersed
Bda01g01550 Bda-Chr1:51418891 Bda14g00644 Bda-Chr14:4830071 3.30E-09 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g281 . . . . . Bpe12g00148 . . Cmo19g00813 Cmo11g01783 . . . . Sed05g2177 Cpe04g00628 Cpe15g00637 Bhi05g01590 Tan02g0585 Cmetu01g0562 . . . . Cla02g00354 Cam02g0363 Cec02g0364 Cco02g0371 Clacu02g0354 Cmu02g0351 . Cone12ag1271 Cone8ag1325 . . . Csa07g00180 . . Blo04g00603 Blo13g00475 . Bda14g00644 . . Bma03g00635 . . . . . Cma19g00792 Car11g01410 Car19g00609 . . . . . . . . . . . . . . . . Lsi11g01279 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005812 1 1 2 1 2 1 1 1 1 1 1 1 2 1 1 2 1 4 2 0 1 1 0 1 1 1 1 2 1 3 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda14g00644 Bda_Chr14 FPKM 101.285034 117.479698 14.738809 13.5285 2.923526 4.272651 2.992954 17.961349 20.002235