Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda14g00652 TTGTTCAGAGCTCCTTTACATTTTCTGATAAAAATGAGTTTGTGTTTATCAAAACCTGTTCTCGCTGGTCTCTATTTGGCACTCTTCATAAGCTGCGTGATTGCCCATGATTTTTCAATCGTGGGTTATTCCTCGGATGACTTAACCTCTTCAGATAAGATCATCGAGCTCTTTGAATCATGGGTTTCAAGGCATGGGAAAATCTACAGAAACGTGGAAGAGAAGCTGCATAGATTAGAAATATTCATGGACAACTTGAAGCACATCGATGAGAGGAACAAATTAATTAGTAGCTATTGGCTCGGGTTGAATGAGTTTGCAGATTTGAGCCATGAAGAGTTTAAGAGCAAGTATTTAGGAAAGTTCGGTTACAGAGATGTGGGGGATTTGCCAAAGTCAGTGGACTGGAGGAAGAAAGGTGCTGTCACTTTTGTCAAGAACCAAGGCTCTTGTGGGAGTTGTTGGGCATTTTCAACAGTGGCAGCTGTTGAGGGAATAAACCAGATAGTGACGGGAAATCTAACAGCCTTGTCCGAGCAAGAGCTAGTAGATTGTGATAGGACATTCAATAATGGCTGTCATGGAGGTCTAATGGATTATGCTTTTCAGTTCATAATCTCTAATGGTGGACTTCACAAGGAGGAAGATTACCCATATCTCATGGATGAAGGAACTTGTGAAGAACAGAAGGATGAATTAGATGTAGTGACTATCGACGGTTTCCAAGATGTTCCAGCAAACGATGAACAAAGCCTCCTAAAAGCAGTTGGTATATTTACAGGACCTTGTGAAACAGATCTAGATCATGGAGTAGCAGCCGTTGGATATGGGTCTTCTAAAGGAACTGATTACATTATAGTGAAGAACTCATGGGGACGAAACTGGGGAGAAAGAGGGTACATTAGAATGAAAAGAAACACAGGAAAAAGTGGGAGGACTCTGTGGTATTAA 951 41.22 LFRAPLHFLIKMSLCLSKPVLAGLYLALFISCVIAHDFSIVGYSSDDLTSSDKIIELFESWVSRHGKIYRNVEEKLHRLEIFMDNLKHIDERNKLISSYWLGLNEFADLSHEEFKSKYLGKFGYRDVGDLPKSVDWRKKGAVTFVKNQGSCGSCWAFSTVAAVEGINQIVTGNLTALSEQELVDCDRTFNNGCHGGLMDYAFQFIISNGGLHKEEDYPYLMDEGTCEEQKDELDVVTIDGFQDVPANDEQSLLKAVGIFTGPCETDLDHGVAAVGYGSSKGTDYIIVKNSWGRNWGERGYIRMKRNTGKSGRTLWY 316
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 4885202 4886573 + Bda027409.1 Bda14g00652 20703

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda14g00652 316 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 267 277 IPR025660 -
Bda14g00652 316 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 148 159 IPR000169 -
Bda14g00652 316 Pfam Cathepsin propeptide inhibitor domain (I29) 58 114 IPR013201 -
Bda14g00652 316 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 34 256 - -
Bda14g00652 316 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 257 311 - -
Bda14g00652 316 Pfam Papain family cysteine protease 130 256 IPR000668 GO:0006508|GO:0008234
Bda14g00652 316 Pfam Papain family cysteine protease 257 308 IPR000668 GO:0006508|GO:0008234
Bda14g00652 316 SUPERFAMILY Cysteine proteinases 52 309 IPR038765 -
Bda14g00652 316 PRINTS Papain cysteine protease (C1) family signature 148 163 IPR000668 GO:0006508|GO:0008234
Bda14g00652 316 PRINTS Papain cysteine protease (C1) family signature 269 279 IPR000668 GO:0006508|GO:0008234
Bda14g00652 316 PRINTS Papain cysteine protease (C1) family signature 284 290 IPR000668 GO:0006508|GO:0008234
Bda14g00652 316 Gene3D Cysteine proteinases 37 313 - -
Bda14g00652 316 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 284 303 IPR025661 -
Bda14g00652 316 CDD Peptidase_C1A 131 308 IPR039417 -
Bda14g00652 316 SMART pept_c1 130 312 IPR000668 GO:0006508|GO:0008234
Bda14g00652 316 PANTHER CYSTEINE PROTEASE XCP1-LIKE 34 256 - -
Bda14g00652 316 PANTHER CYSTEINE PROTEASE XCP1-LIKE 257 311 - -
Bda14g00652 316 SMART Inhibitor_I29_2 58 114 IPR013201 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda14g00652 K16290 XCP; xylem cysteine proteinase [EC:3.4.22.-] - qsu:111997741 475.707
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda14g00652 Bda-Chr14:4885202 Bda14g01235 Bda-Chr14:12682877 2.19E-105 dispersed
Bda14g00652 Bda-Chr14:4885202 Bda15g00848 Bda-Chr15:13193259 5.62E-110 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g306 . . . . . . . . . Cmo11g01798 . . . . Sed05g2142 Cpe04g00640 . Bhi05g01552 Tan02g0549 Cmetu01g0266 Lac12g0456 Hepe02g0352 . . Cla02g00332 Cam02g0341 Cec02g0342 Cco02g0346 Clacu02g0332 Cmu02g0330 Cre02g0662 Cone12ag1288 Cone8ag1342 . Cone10ag1012 . Csa07g00207 . . Blo04g00610 Blo13g00466 . Bda14g00652 Bpe15g00777 . . . . . . Cma11g01323 . Car11g01424 . . . . . . . . . . . . . . . . . Lsi11g01302 . Chy01g00573 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002657 1 2 2 0 1 1 3 1 1 2 2 2 2 2 2 2 1 3 2 2 2 2 2 2 2 2 2 2 2 2 54
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda14g00652 Bda_Chr14 FPKM 0.830114 0.896255 3.978579 4.840544 0.514122 0.396129 0.800387 3.778758 3.563499