Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda14g00661 ATGGGTTATATATGTGATTTCTGTCGGTATCAAAGGTCAATGGTTTATTGCCGTTCCGATGCTGCCTGTTTGTGCTTATCATGTGATCGTAAGGTCCACTCGGCTAATGCCTTGTCAAGGCGCCATACGAGATCACTATTATGTGAGAAGTGCAATTTACAGCCTGCATTGGTAAGATGTGTTGAAGAGGGAATTTCTCTCTGTCAGAATTGTGATTGGATGTGCCACAACACGTCTACTTCTTCGTGTCACCAGAAGGAAACAATCAATTGCTATGCAGGTTGCCCATCAGCTTCTGAGCTTTCTTCTATTTGGTCATTTTTCATAGATCTGCCCACTGTAGGAGATGATTGTGAGCAAGAATTAGGATTAATGAGAATCACTGAGAATGGAGGCCACCCAGCAAATAATGCAGCTCAAGATGCTTGCAGCATGGATAATTCAACCATTTGGGTTGCCTCTTCTTCAGTATCAACACTTAATTTTGCACCACGTGTGATAGAGCATTCAGATCGATCCATGAATACGAGTTTACCGAAGCCATGCTGTCCTGGACCAAAAGGCGCCGATTCCTGGGAACTATACAATCTCTACGAGGATTTGGATTTGGGTCTTGAAACTTTTGAGGAACTATTTGGTGTAGCCAGGAAGCCCGAAGAGCTTCTGGAGAATGGTGGGATCGATAGCTTGTTCGGGAAAAAAGGCATATCTACTGTTGATTCCGATGGCCATGGTGCTGCTGCCACTGAGGTAATGCATTTACATGTGCTGAACTCAAATGTTCTTCTCAAGGAGTCGTCAGGCGCATTAGTGAATGCAATGCAGCCAGCAAGCAGCAATGCTGCATCTGCAGATTCCATCGTGAGTACTAAAACAGACTCAATTCTTTGTTGTAATTCAAGGCCAGCACTTTCAACCCTCTCGTTTTCTGGTCCCACCGGAGAAACTAGTAGTGGAGGTCATCAGGATTGCGAAGTCTCACCAATGATCTTAATGGGAGAACCTCCGTGGGGTCAACTGTGTCCCGAGACTCCCTGTCCATCTGGTAATCGTAGTAATGCTGTTATGCGATACATTGAAAAGAAAAAAATGCGCAAGTTTGAGAAAAAAGTTAGGTATGAATCTCGAAAAGCAAGGGCTGACGGGAGGAGCCGGGCCAAAGGACGGTTTGTCAAAGCTGGATATGCTCACGATTATGATCCATTGTGCAAAACCAGAAGCTATTAA 1227 44.66 MGYICDFCRYQRSMVYCRSDAACLCLSCDRKVHSANALSRRHTRSLLCEKCNLQPALVRCVEEGISLCQNCDWMCHNTSTSSCHQKETINCYAGCPSASELSSIWSFFIDLPTVGDDCEQELGLMRITENGGHPANNAAQDACSMDNSTIWVASSSVSTLNFAPRVIEHSDRSMNTSLPKPCCPGPKGADSWELYNLYEDLDLGLETFEELFGVARKPEELLENGGIDSLFGKKGISTVDSDGHGAAATEVMHLHVLNSNVLLKESSGALVNAMQPASSNAASADSIVSTKTDSILCCNSRPALSTLSFSGPTGETSSGGHQDCEVSPMILMGEPPWGQLCPETPCPSGNRSNAVMRYIEKKKMRKFEKKVRYESRKARADGRSRAKGRFVKAGYAHDYDPLCKTRSY 408
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 4984289 4986284 + Bda027419.1 Bda14g00661 20712

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda14g00661 408 CDD Bbox1_BBX-like 4 47 - -
Bda14g00661 408 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 1 408 - -
Bda14g00661 408 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Bda14g00661 408 SMART bboxneu5 4 47 IPR000315 GO:0008270
Bda14g00661 408 ProSiteProfiles Zinc finger B-box type profile. 43 89 IPR000315 GO:0008270
Bda14g00661 408 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 9-LIKE 1 408 - -
Bda14g00661 408 Pfam CCT motif 351 393 IPR010402 GO:0005515
Bda14g00661 408 ProSiteProfiles CCT domain profile. 351 393 IPR010402 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda14g00661 - - - jre:109000761 488.034
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda11g00378 Bda-Chr11:4164682 Bda14g00661 Bda-Chr14:4984289 3.46E-08 dispersed
Bda13g00523 Bda-Chr13:6300531 Bda14g00661 Bda-Chr14:4984289 5.19E-27 dispersed
Bda13g00639 Bda-Chr13:7353320 Bda14g00661 Bda-Chr14:4984289 1.83E-09 dispersed
Bda14g00661 Bda-Chr14:4984289 Bda07g01539 Bda-Chr7:28582137 1.06E-14 dispersed
Bda14g00661 Bda-Chr14:4984289 Bda13g00629 Bda-Chr13:7283645 6.75E-65 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi12g737 . Blo15g00433 . . Bpe12g00169 Bpe15g00764 Bma03g00658 Bma08g00690 . Cmo19g00853 Cma02g00242 Cma20g00703 . . . Cpe15g00673 Cpe04g00659 Bhi05g01505 . . Lac12g0415 Hepe02g0327 . . Cla02g00307 Cam02g0316 Cec02g0317 Cco02g0319 Clacu02g0307 Cmu02g0306 Cre02g0639 Cone3ag1271 . Cone8ag1358 Cone12ag1303 . Csa07g00235 Chy11g00733 Cme01g00573 . Blo13g00448 Bda14g00661 . . Bpe07g00668 Bma02g01294 Bma12g00873 . Cmo02g00244 . . Cma19g00837 Car11g01444 Car19g00649 . Cpe05g01383 Bhi10g01288 . . . Hepe08g0372 . . . . . . . . . Lsi11g01330 Csa06g00975 Chy01g00545 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bda14g00661 . 1 408 C2C2-CO-like Transcription Factor Family AT3G07650 50.2 1.3e-72 270.4
Bda14g00574 CCT,ECH 1 188 C2C2-CO-like Transcription Factor Family AT1G75540 53.4 6.6e-52 201.4
Bda06g00954 BCT,CCT,ECH 1 197 C2C2-CO-like Transcription Factor Family AT1G75540 54.4 8.7e-52 201.1
Bda08g00955 BCT,CCT,ECH 1 194 C2C2-CO-like Transcription Factor Family AT1G75540 53.4 2.5e-51 199.5
Bda10g00172 CCT,ECH 1 177 C2C2-CO-like Transcription Factor Family AT2G21320 62.1 1.6e-52 202.6
Bda14g00989 . 1 176 C2C2-CO-like Transcription Factor Family AT2G21320 59.1 1.1e-50 196.4
Bda11g01843 CCT,ECH 1 182 C2C2-CO-like Transcription Factor Family AT2G21320 57.7 1.9e-50 195.7
Bda10g00172 CCT,ECH 1 176 C2C2-CO-like Transcription Factor Family AT4G38960 62.9 1.8e-54 209.1
Bda11g01843 CCT,ECH 1 180 C2C2-CO-like Transcription Factor Family AT4G38960 59.4 1.1e-51 199.9
Bda14g00989 . 1 174 C2C2-CO-like Transcription Factor Family AT4G38960 58.6 2.9e-49 191.8
Bda06g00954 BCT,CCT,ECH 1 193 C2C2-CO-like Transcription Factor Family AT4G39070 58.0 2.8e-55 212.2
Bda08g00955 BCT,CCT,ECH 1 189 C2C2-CO-like Transcription Factor Family AT4G39070 56.7 4.7e-55 211.5
Bda14g00574 CCT,ECH 1 181 C2C2-CO-like Transcription Factor Family AT4G39070 54.5 5.7e-53 204.5
Bda08g01236 BCT,CCT,ECH 1 208 C2C2-CO-like Transcription Factor Family AT4G39070 51.9 1.2e-47 186.8
Bda01g00506 CCT,ECH 1 112 C2C2-CO-like Transcription Factor Family AT4G39070 64.3 3.1e-38 155.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000824 1 8 2 4 3 2 4 2 2 2 1 2 4 2 2 4 2 2 4 2 2 2 2 2 2 2 2 18 2 1 90
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17043 PF06203 CCT 3.90E-15 CL0281 Bda TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda14g00661 Bda_Chr14 FPKM 3.402899 3.937165 0.0 0.0 0.0 0.0 0.0 0.0 0.0