Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda14g00783 ATGGATGACGATGACTCTGTCCCCGTTTCAGCTCCAGATATTAACAGATTGGCTATCAATGACAACAATCAAGATAAAAGTACGTTAATGAACAAAGACACTGATGCTGTAGAAGTTGAAGGTAGTAAACGGGTAAACAAATTTGGGAAATGCCGTTCAAGAATAAGTAAAGCTGATTGCTCCGGTGATTATGGACCTGAAGCTGATGCCGAGCATCAAGGTCCAGGAGTTTCCTCATCTCGTGAAGAAAAAGTCAGCAGCCTCAAAACTGGTTTGGCTCATGTTGCAAGGAAGATGCCAAAAAATGCTCATGCTCATTTTATTCTTGGCCTAATGTACCAAAGAGTTGGGCAACCACAGAAGGCAGTTGCAGCATACGAGAAGGCAGAGGAGATCTTACTTCGTTCTGATTCTGAGATTGATAGGCCAGAATTTCTGTCAATGGTTCAAATCCACCATGCACAGTGCGTTCTACTAGAAACTGCTGGGGATAGGTCAGATAAAGAACTTGAGCGTGAAGAGCTAGAGGAAATTCTCAATAAACTTAAGGAGTCGATGCAATCTGATGTTAGACAGGCAGCTTTATGGAATACTGTAGGCTTGATGCATCTTACAACTGGTCGTCTGCAGAATGCTATTGCTGTTTTTTCTTCTTTGTTGAGCATTGTTCCTGACAACTATGATTGCCTTGGAAACCTTGGAATTGCTTATCTTCAAAGCGGAAATGTGGAACAATCAGAAAAATGTTTTCAAGAATTGATCTTGAAAGATCAAAATCATCCTGCTGCCTTAATCAACTATGCTGCTCTTCTGTTATGCAAGTATGGTGCAAATGTTTCAGGTGCTGGGGCAAATGCTGGGGAAGGATCTTCAGTGAATCAGATCAAAGGTATGATTGTTGCAAAAGAGTGTTTGCTGACAGCTTTGAAAGCAGATCCAAAAGCGGCTCATTTATGGGCAAATCTTGCTAATGCATACCATATTATTGGTGATTACAGAAGTTCTGGAAAGTGCTTGGAGAAGGTGGCAAAACTGGAACCCAATTGCATGTCTATGCGGTATTCCATTGCTGTGCACCGAATAAAGGATGCAGAGAGATCCCAAGATCAAAGTGAACAGCTTGCCTGGGCAGGAAACGAAATGGCTTCAATAATAAGAGATGGAGATAGTTCTGTAATTGAGCATCCTATAGCATGGGCGGGGCTTGCCATGGCACAGAAGGCCCGACACGAGATTTCTGCAGCATTTCAAATTGAGCAGTCTGAGCTAATGGAGGCTGAAGAGCGAGCAGTTCATAGTTTAAAGCAGGCTATATCTGAGGATCCCGAAGATGCAGTACAGTGGCACCAACTTGGCCTGCACAGCCTTTGTACTAGGCAGTTCAAATCATCACAAAGGTACCTCAAATCCGCCGTTGCTCGCTTCAAGGATTGCAGTTATGCATGGTCAAATCTTGGCATTTCACTGCAGCTGTCAGAAGAGCCGGTACATGCTGAAGAAGTATACAAGCGAGCCTTGGAATTGGCCACTGAAAACTGCGCACATGTGATATTTTCGAACCTTGGAAATCTGTACCGGCAGCAAAATCAGTATGAGCGTGCCAAAGCCATGTTTTCAAAGTCTCTGGACCTGCAGCCTGGCTATCCACCTGCATTTAACAATCTAGGCCTTGTATTTGTTGCCGAAGGTCAATGGGAAGAAGCTAAATATTGTTTTGACAAAGCCCTGCAAGTTGACCCATTACTTGACGCAGCCAAATCCAATGTGATTAAAGCAGCAGCCATGTCAAAATTTTGTAGCAGCTAG 1806 43.52 MDDDDSVPVSAPDINRLAINDNNQDKSTLMNKDTDAVEVEGSKRVNKFGKCRSRISKADCSGDYGPEADAEHQGPGVSSSREEKVSSLKTGLAHVARKMPKNAHAHFILGLMYQRVGQPQKAVAAYEKAEEILLRSDSEIDRPEFLSMVQIHHAQCVLLETAGDRSDKELEREELEEILNKLKESMQSDVRQAALWNTVGLMHLTTGRLQNAIAVFSSLLSIVPDNYDCLGNLGIAYLQSGNVEQSEKCFQELILKDQNHPAALINYAALLLCKYGANVSGAGANAGEGSSVNQIKGMIVAKECLLTALKADPKAAHLWANLANAYHIIGDYRSSGKCLEKVAKLEPNCMSMRYSIAVHRIKDAERSQDQSEQLAWAGNEMASIIRDGDSSVIEHPIAWAGLAMAQKARHEISAAFQIEQSELMEAEERAVHSLKQAISEDPEDAVQWHQLGLHSLCTRQFKSSQRYLKSAVARFKDCSYAWSNLGISLQLSEEPVHAEEVYKRALELATENCAHVIFSNLGNLYRQQNQYERAKAMFSKSLDLQPGYPPAFNNLGLVFVAEGQWEEAKYCFDKALQVDPLLDAAKSNVIKAAAMSKFCSS 601
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 6032640 6039338 - Bda027549.1 Bda14g00783 20834

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda14g00783 601 Gene3D Tetratricopeptide repeat domain 160 276 IPR011990 GO:0005515
Bda14g00783 601 ProSiteProfiles TPR repeat region circular profile. 515 546 - -
Bda14g00783 601 SUPERFAMILY TPR-like 428 580 IPR011990 GO:0005515
Bda14g00783 601 Coils Coil 165 192 - -
Bda14g00783 601 ProSiteProfiles TPR repeat profile. 549 582 IPR019734 GO:0005515
Bda14g00783 601 SUPERFAMILY TPR-like 100 353 IPR011990 GO:0005515
Bda14g00783 601 Gene3D Tetratricopeptide repeat domain 81 137 IPR011990 GO:0005515
Bda14g00783 601 Pfam Tetratricopeptide repeat 550 580 IPR001440 GO:0005515
Bda14g00783 601 SMART tpr_5 515 548 IPR019734 GO:0005515
Bda14g00783 601 SMART tpr_5 445 478 IPR019734 GO:0005515
Bda14g00783 601 SMART tpr_5 103 136 IPR019734 GO:0005515
Bda14g00783 601 SMART tpr_5 193 226 IPR019734 GO:0005515
Bda14g00783 601 SMART tpr_5 316 349 IPR019734 GO:0005515
Bda14g00783 601 SMART tpr_5 549 582 IPR019734 GO:0005515
Bda14g00783 601 SMART tpr_5 479 512 IPR019734 GO:0005515
Bda14g00783 601 SMART tpr_5 227 260 IPR019734 GO:0005515
Bda14g00783 601 ProSiteProfiles TPR repeat region circular profile. 549 580 - -
Bda14g00783 601 MobiDBLite consensus disorder prediction 16 30 - -
Bda14g00783 601 ProSiteProfiles TPR repeat profile. 316 349 IPR019734 GO:0005515
Bda14g00783 601 Gene3D Tetratricopeptide repeat domain 503 597 IPR011990 GO:0005515
Bda14g00783 601 Gene3D Tetratricopeptide repeat domain 293 386 IPR011990 GO:0005515
Bda14g00783 601 MobiDBLite consensus disorder prediction 59 88 - -
Bda14g00783 601 Pfam Tetratricopeptide repeat 481 544 - -
Bda14g00783 601 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-CONTAINING PROTEIN 9 600 - -
Bda14g00783 601 MobiDBLite consensus disorder prediction 1 31 - -
Bda14g00783 601 Pfam Tetratricopeptide repeat 207 262 - -
Bda14g00783 601 Pfam Tetratricopeptide repeat 316 349 IPR019734 GO:0005515
Bda14g00783 601 Pfam Tetratricopeptide repeat 103 132 IPR019734 GO:0005515
Bda14g00783 601 ProSiteProfiles TPR repeat profile. 193 226 IPR019734 GO:0005515
Bda14g00783 601 ProSiteProfiles TPR repeat profile. 103 136 IPR019734 GO:0005515
Bda14g00783 601 Gene3D Tetratricopeptide repeat domain 393 502 IPR011990 GO:0005515
Bda14g00783 601 ProSiteProfiles TPR repeat profile. 515 548 IPR019734 GO:0005515
Bda14g00783 601 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-CONTAINING PROTEIN-RELATED 9 600 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda14g00783 - - - qsu:112032736 895.19
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda14g00783 Bda-Chr14:6032640 Bda03g00010 Bda-Chr3:316537 4.05E-06 dispersed
Bda14g00778 Bda-Chr14:5975052 Bda14g00783 Bda-Chr14:6032640 0 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g884 Blo04g00710 . . . . . . . Cmo13g00806 . . . . . . Cpe20g00336 . . . . . . . . . . . . . . . . . Cone13ag0196 . Lsi02g00462 Csa01g00919 Chy12g01208 Cme12g01629 . . . Bda14g00783 . Bpe15g00663 Bma03g00758 . . . . Cma13g00775 . Car13g00621 . . . Bhi08g01689 . . Lac10g0534 . . . Cla03g00319 . . . Clacu03g0337 Cmu03g0943 . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009614 2 2 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda14g00783 Bda_Chr14 FPKM 0.589126 0.0 0.604661 0.185364 2.419801 2.752423 2.173732 0.0 0.0