Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda14g00790 CCAATGGGAGTCAAGCTCTCGCTCTTTTTCTCTCTCCTCATCGTGTCTCTCCTTACTCCCGACGTCCTCTCCTCCCCAGTTAAGGACCCAGAGCTCGTAGTACAGCAAGTACACAGAAGCATCAATGCCTCCAGGCGGAGCCTTGGCTACCTCTCCTGCGGCACCGGAAACCCTATCGACGACTGCTGGCGGTGTGACCCCAACTGGGAGAAGAATCGACAGCGCCTAGCCGATTGCGCAATCGGGTTCGGTAAAAACGCCGTCGGAGGCCGCGACGGTTTGATCTACGTAGTTACTGACGATGGCGACGATGATCCAGTGAACCCGAAACCCGGTACGCTCCGATACGCAGTGATTCAAGACGAACCGCTCTGGATAATTTTCGCCAGGGACATGGGGATAAAACTGAAAGAAGAACTGATAATGAATTCTTTCAAAACCATCGACGGGAGAGGGGCCGACGTCCATATTTCTGGGGGACCTTGCATTACGATACAGTACGTGACAAATATTATAATCCACGGTCTCCATATCCACGACTGTAAGCAAGCGGGGAATGCTTACGTGCGGGACTCCCCACATCACTATGGGTGGAGAACTGAATCGGACGGAGATGGGGTTTCAATCTTCGGTGGTAGCCATGTTTGGGTCGATCATTGCTCTTTGTCGAACTGTAACGACGGCCTGATCGATGCGATTCATGGATCTACGGCGATTACGATTTCAAATAATTATATGACACATCATGATAAGGTAATGTTGTTAGGTCACAGCGATTCATACAGCCAAGACAAGAACATGCAGGTCACCATTGCCTTTAATCACTTTGGAGAAGGCCTAATACAAAGAATGCCCAGGTGTAGGCATGGGTATTTTCATGTGGTCAACAACGACTACACCCATTGGGAAATGTATGCCATTGGAGGGAGCGCAGCCCCTACGATCAATAGCCAAGGCAACCGATTTGTTGCCCCAGACGACAGATTCAATAAAGAGGTGACGAAGCGTGAGGATGCACCGGAGAGCGAATGGAAGGGATGGCATTGGAGGTCAGAGGGAGACTTGATGTTAAACGGTGCGTTTTTCACGGCATCTGGGGCCGGAGCTTCTTCAAGCTATGCTAAAGCTTCGAGCTTGGGTGCTAGGCCATCTACCCTAGTTGGTTCCATTACAGTCGGCGCTGGTGCACTCGATTGCAAGAAGGGCTCGCGCTGCTGA 1218 51.15 PMGVKLSLFFSLLIVSLLTPDVLSSPVKDPELVVQQVHRSINASRRSLGYLSCGTGNPIDDCWRCDPNWEKNRQRLADCAIGFGKNAVGGRDGLIYVVTDDGDDDPVNPKPGTLRYAVIQDEPLWIIFARDMGIKLKEELIMNSFKTIDGRGADVHISGGPCITIQYVTNIIIHGLHIHDCKQAGNAYVRDSPHHYGWRTESDGDGVSIFGGSHVWVDHCSLSNCNDGLIDAIHGSTAITISNNYMTHHDKVMLLGHSDSYSQDKNMQVTIAFNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSAAPTINSQGNRFVAPDDRFNKEVTKREDAPESEWKGWHWRSEGDLMLNGAFFTASGAGASSSYAKASSLGARPSTLVGSITVGAGALDCKKGSRC 405
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 6120551 6122066 + Bda027559.1 Bda14g00790 20841
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda14g00790 405 SUPERFAMILY Pectin lyase-like 42 397 IPR011050 -
Bda14g00790 405 PANTHER PECTATE LYASE 12 402 - -
Bda14g00790 405 Gene3D - 56 398 IPR012334 -
Bda14g00790 405 SMART amb_all 131 328 IPR002022 -
Bda14g00790 405 PRINTS Pollen allergen Amb family signature 203 224 IPR018082 -
Bda14g00790 405 PRINTS Pollen allergen Amb family signature 103 128 IPR018082 -
Bda14g00790 405 PRINTS Pollen allergen Amb family signature 139 155 IPR018082 -
Bda14g00790 405 PRINTS Pollen allergen Amb family signature 347 371 IPR018082 -
Bda14g00790 405 PRINTS Pollen allergen Amb family signature 79 96 IPR018082 -
Bda14g00790 405 PRINTS Pollen allergen Amb family signature 305 324 IPR018082 -
Bda14g00790 405 PRINTS Pollen allergen Amb family signature 376 399 IPR018082 -
Bda14g00790 405 PRINTS Pollen allergen Amb family signature 283 302 IPR018082 -
Bda14g00790 405 PANTHER PECTATE LYASE 18-RELATED 12 402 IPR045032 GO:0030570
Bda14g00790 405 Pfam Pectate lyase 137 322 IPR002022 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda11g01630 Bda-Chr11:50028723 Bda14g00790 Bda-Chr14:6120551 4.62E-25 dispersed
Bda14g00785 Bda-Chr14:6062290 Bda14g00790 Bda-Chr14:6120551 0 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda14g00790 K01728 - pop:7453817 720.694