Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda14g00797 ATGGATGGACTGAGGGCAAAAATTTGTAGTCTTTTTAATTTTCCCCCCGATGCTGATCTGAAAATGACTTATATTGATGAAGATGGTGATGAGGTGACCTTGGTCGACGATGATGATCTCTTTGATGCGATCAGGCAACGGTTGAAATTCTTGAGGATTGATGTTCGATTGAGTGATGAGAGTAGTAGTAAAATTAGTGTTCAGTCAAGTGGAAATTCCACCCCACTTAGAACTTCTCAGACTGAGAATCGTTTTCCAAATATTAATGCTGGTGTTGCTGAGATTTTGAAACCTTTGCCAGAGCCTGTTCATGAGGCATTTTCAAAGCTCTATAGTGACATTTCTTCAAAGGTTGCTTTGTCTAATCCTGCGATTGCAGACATTGTTGAAAGCCTTGTTCATCTGGGTAACTCATACCGGAATTCAGATTCACAGCCTCCCACTGGTGCAGAGTCAAGCACACAGAATGTACCCTTTGAGAGCCCAATGCCTCCTTCTGTCACTAATTCTAAGCCCTCAAAGGACGATGACTATCCAATAGCATCTCCAAGGTCCAAATTGGCCGAGGTCCCTTCCAAAAACATTCAAGAGGTCAATGCTGGAAATTTAACTGAGAGTCTGGGTAATAATGCTACCCCTATTCAGGTTGATCTTAATGTTCATCCAACTGATTCCAAAGAATCGGAATGTGTTATTTTAAATGTAGAACCATCGGCATCTAATACCACATCTGGTATGAAGAAAGAACCTAACAAAGAGAGAGAGAAGGAGACACCCCCTTGTTTCTTTAGTGGAATTTATGGGAGTGATGATGTCTTTACAAGGATGGGTGGGATGGGTGATGTCTTTACAAGGATGGGTGATACAGAGCGAGAATATCCAAATGAGTGTCCATATAGTGGAGTACCTGTAGCTGGGGACTTTCCTTTTTCGCCGATTTCACCCAGTCACATTTATCCAGCTAAAAGAAGCTTCAGCCGATGTGCAGATTTGGGCACCGTGTTTCATAGGGGTGTTATTTGTGATGGTTGTGGAGTACATCCAATAACTGGACCACGTTTCAAGTCCAAAGTGAAAGAAGACTTTGATCTCTGCAGCATGTGTTTTGCAACAATCGGAAATGAAGCTGATTATGTTAGAATGGACCATCCTATCCACCATCGGCATTCACGATCTTTCCGAGGATTACATAATCAGGCATCGTCCATTTCGGCTGGGTGTATTCCTGTGGATAAAGAAGTAGATATTGCAGTGGATTTTATTGCGCCTGAGTTGCCAGGTCGATACATCTCATATTGGAGAATGGCGGCTCCATCTGGTCAGAAGTTCGGGCAACGGGTTTGGGTTCTCATACAGGTTGACGCATCTCTTGGGAGGACTCTTTCAGCTGGTTTGCAAGATTTGAACCTGAATCTTCCCCCGCTAAGTGGCATGGGTAATGGGCCTCAAACAATTGATATGAATGTTGAACCCCGTGAAAACAACTCCTTCCTCCAGGCCATTCCAGTGAAACCAGCTGATGAACTGCCTAAAAGCGAGAGTGAGATGTATTTTCCCATAGATGACACCTTGATAGTTGGTCAGAGTTTTCCTTGCCCAACGGTCCCTACTGCTCCTGCGTCTTCTTCAGCTATTCCTCCACTGATGTACCCCATCATTGATGTTTCCATGCCGGCCCCTGTCATTGTTACCCCTCCACCAACTGAAGACAGCTTTGCCAACAAAGAGCTCGAGGAGAGCCTCCTTAAAGAGCTCCAGGAGATGGGATTCAAACAGGTTGATTTAAACAAAGAAGTCCTGAGGATCAACGAGTACAATTTGGAACAGTCAGTGGATGATCTCTGTGGAGTGTCTGAATGGGATCCAATTCTTGAAGAGTTGGAAGAAATGGGATTCTGTGATAAGGTGATGAACAAGAAGCTGCTGGTGAAGAATAATGGTAGCATCAAGCATGTGGTCATGGACCTCATCTCTGGGGAGAAGGCTTAG 1989 44.19 MDGLRAKICSLFNFPPDADLKMTYIDEDGDEVTLVDDDDLFDAIRQRLKFLRIDVRLSDESSSKISVQSSGNSTPLRTSQTENRFPNINAGVAEILKPLPEPVHEAFSKLYSDISSKVALSNPAIADIVESLVHLGNSYRNSDSQPPTGAESSTQNVPFESPMPPSVTNSKPSKDDDYPIASPRSKLAEVPSKNIQEVNAGNLTESLGNNATPIQVDLNVHPTDSKESECVILNVEPSASNTTSGMKKEPNKEREKETPPCFFSGIYGSDDVFTRMGGMGDVFTRMGDTEREYPNECPYSGVPVAGDFPFSPISPSHIYPAKRSFSRCADLGTVFHRGVICDGCGVHPITGPRFKSKVKEDFDLCSMCFATIGNEADYVRMDHPIHHRHSRSFRGLHNQASSISAGCIPVDKEVDIAVDFIAPELPGRYISYWRMAAPSGQKFGQRVWVLIQVDASLGRTLSAGLQDLNLNLPPLSGMGNGPQTIDMNVEPRENNSFLQAIPVKPADELPKSESEMYFPIDDTLIVGQSFPCPTVPTAPASSSAIPPLMYPIIDVSMPAPVIVTPPPTEDSFANKELEESLLKELQEMGFKQVDLNKEVLRINEYNLEQSVDDLCGVSEWDPILEELEEMGFCDKVMNKKLLVKNNGSIKHVVMDLISGEKA 662
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 6151476 6154373 - Bda027566.1 Bda14g00797 20848

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda14g00797 662 SUPERFAMILY UBA-like 620 657 IPR009060 GO:0005515
Bda14g00797 662 Gene3D Immunoglobulins 373 456 IPR013783 -
Bda14g00797 662 Gene3D - 619 660 - -
Bda14g00797 662 Pfam Zinc finger, ZZ type 336 373 IPR000433 GO:0008270
Bda14g00797 662 MobiDBLite consensus disorder prediction 139 175 - -
Bda14g00797 662 Gene3D - 572 618 - -
Bda14g00797 662 PANTHER PROTEIN JOKA2 259 400 - -
Bda14g00797 662 PANTHER PROTEIN JOKA2 403 660 - -
Bda14g00797 662 SMART zz_5 335 380 IPR000433 GO:0008270
Bda14g00797 662 PANTHER PROTEIN JOKA2 1 146 - -
Bda14g00797 662 CDD UBA_NBR1 619 657 - -
Bda14g00797 662 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 576 614 IPR015940 -
Bda14g00797 662 MobiDBLite consensus disorder prediction 238 260 - -
Bda14g00797 662 SUPERFAMILY UBA-like 559 615 IPR009060 GO:0005515
Bda14g00797 662 PANTHER OVARIAN CARCINOMA ANTIGEN CA125-RELATED 1 146 - -
Bda14g00797 662 MobiDBLite consensus disorder prediction 139 194 - -
Bda14g00797 662 ProSiteProfiles PB1 domain profile. 1 58 IPR000270 GO:0005515
Bda14g00797 662 PANTHER OVARIAN CARCINOMA ANTIGEN CA125-RELATED 403 660 - -
Bda14g00797 662 MobiDBLite consensus disorder prediction 62 82 - -
Bda14g00797 662 Pfam Ig-like domain from next to BRCA1 gene 398 453 IPR032350 -
Bda14g00797 662 Pfam PB1 domain 2 46 IPR000270 GO:0005515
Bda14g00797 662 SUPERFAMILY RING/U-box 333 388 - -
Bda14g00797 662 SUPERFAMILY CAD & PB1 domains 2 55 - -
Bda14g00797 662 Gene3D - 1 57 - -
Bda14g00797 662 CDD NBR1_like 393 454 IPR032350 -
Bda14g00797 662 ProSiteProfiles Zinc finger ZZ-type profile. 336 386 IPR000433 GO:0008270
Bda14g00797 662 PANTHER OVARIAN CARCINOMA ANTIGEN CA125-RELATED 259 400 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda14g00797 K17987 NBR1; next to BRCA1 gene 1 protein - tcc:18604033 300.441
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g826 Blo04g00719 . . . . . . . Cmo13g00893 Cmo18g00152 . . . . . Cpe20g00262 . . . . . . . . . . . . . . . . . Cone13ag0168 Cone19ag0165 . Csa01g00883 Chy12g01240 Cme12g01663 . . . Bda14g00797 . Bpe15g00653 Bma03g00769 . Sed01g1623 . . Cma13g00862 Cma18g00191 Car13g00705 Car18g00183 Cpe09g01004 . Bhi08g01660 Tan05g1970 Cmetu12g0808 . . . . Cla03g00287 Cam03g0304 Cec03g0298 Cco03g0313 Clacu03g0305 Cmu03g0915 Cre03g0607 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004955 1 2 1 1 1 2 2 2 2 1 2 2 2 1 1 2 2 2 2 2 1 1 0 1 1 0 1 1 1 1 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda14g00797 Bda_Chr14 FPKM 20.281715 22.831795 46.954952 45.603695 75.919731 82.122787 75.818634 99.486092 108.383331