Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda14g00819 ATGCCGCCGTCATTGCCATCGACGACGTCTTCTCCGTCGGTAACGTTGAGCTTATTGACCCCGCCTCCACTTCCTCTAACCACGACGGCCGTGGACGTGGTCGCGGCCGTCCGAGGAAGCTTCCTAAGTTTCCTGATATGCCCGACAAGTCCCCCCTCATGTCTCCGTCCAGGCGTCTCCCTAGGGCAATGGACAACGGTGATTTCAAACTCGTCGGGAGATGTGGTGGCCCCCTCCGTTGTATCTGGGGCGGAACCGGTTTGGGTAGGAGTCGCTAGGGTGCTTCCGGCTATGGACTCCGTGGTGAAAGTGTTTTGTGTACATACAGAACCAAATTTTTCGCTCCCATGGCAGAGGAAGAGGCAGTATAGCTCGAGTAGCAGTGGGTTCGTGATTAGCGGGAAGAGGGTCCTGACCAATGCACATTCAGTGGAGCATTATACTCAGGTTAAGCTCAAAAAGCGTGGCTCTGATACTAAGTATTTGGCCACGGTTTTGTCCATTGGAACTGAATGCGATATTGCCTTGCTTGCTGTTGATGATGATGAGTTTTGGCAAGGAGTTTCACCGGTGGAGTTTGGAGAGTTGCCTGCACTTCAAGATGCTGTGACTGTAGTTGGCTATCCAATTGGGGGTGATACTATTTCTGTCACGAGTGGTGTTGTATCTCGAATAGAGATCCTATCTTATGTCCATGGATCTACTGAGCTTCTGGGTTTGCAGATTGACGCTGCTATAAACTCTGGGAATTCTGGAGGGCCTGCCTTTAATGACAAAGGAAAATGTGTTGGCATTGCTTTTCAGTCTCTTAAACATGAAGACGTGGAGAACATTGGTTATGTCATTCCAACCCCAGTCATTATGCATTTTATTCAGGATTACGAAAGGAATGGATCATATACAGGATTTCCAATTCTTGGCGTTGAGTGGCAGAAAATGGAAAATCCTGATTTGCGTTTGTCAATGGGTATGAAACCTGATCAGAAAGGGGTACGTATTAGAAGAATTGATCCCACTGCCCCAGAGGCCAAAGTGTTGAAGCCATCAGATATTATTCTTAACTTCGATGGGGTTGATATTGCAAATGATGGCACAGTTCCTTTTCGACATGGAGAGCGTATAGGTTTTAGCTACCTTGTTTCTCAGAAATATACTGGGGCTGATGCGGTTATAAAAGTTCTGCGCAATTCCAAGGCTCTTAGTTTTACCATCACACTCGGAACCCATCGGAGGCTCATTCCAGCGCACAACAAGGGCAAACCTCCTTCATATTACATTATTGGTGGATTTGTCTTCACTACTGTATCTGTTCCTTATCTTCGTTCCGAGTATGGAAAGGATTATGAATATGAAGCCCCAGTTAAACTTTTGAACAAACTATTACATTCAATGCCACAGTCAGTAGACGAGCAGCTTGTGGTAGTTTCTCAGGTGCTTGTGGCTGATATCAACATTGGTTATGAAGAAATTGTTAACACCCAGGTTCTTGCATTCAATGGTATGCCTGTGAAAAATTTGAAGAGTTTGGCCACAATGGTTGAAAGTTGTAATGATGAATTTTTGAAGTTTGATTTAGAATACCATCAGATTGTTGTCCTTCGGTCCAGTACTGCTAAAGCAGCTACTCTAGATATTCTGGCGACACACTGCATACCCTCTGCAATGTCGGATGATCTAAAAAATTAG 1686 45.43 MPPSLPSTTSSPSVTLSLLTPPPLPLTTTAVDVVAAVRGSFLSFLICPTSPPSCLRPGVSLGQWTTVISNSSGDVVAPSVVSGAEPVWVGVARVLPAMDSVVKVFCVHTEPNFSLPWQRKRQYSSSSSGFVISGKRVLTNAHSVEHYTQVKLKKRGSDTKYLATVLSIGTECDIALLAVDDDEFWQGVSPVEFGELPALQDAVTVVGYPIGGDTISVTSGVVSRIEILSYVHGSTELLGLQIDAAINSGNSGGPAFNDKGKCVGIAFQSLKHEDVENIGYVIPTPVIMHFIQDYERNGSYTGFPILGVEWQKMENPDLRLSMGMKPDQKGVRIRRIDPTAPEAKVLKPSDIILNFDGVDIANDGTVPFRHGERIGFSYLVSQKYTGADAVIKVLRNSKALSFTITLGTHRRLIPAHNKGKPPSYYIIGGFVFTTVSVPYLRSEYGKDYEYEAPVKLLNKLLHSMPQSVDEQLVVVSQVLVADINIGYEEIVNTQVLAFNGMPVKNLKSLATMVESCNDEFLKFDLEYHQIVVLRSSTAKAATLDILATHCIPSAMSDDLKN 561
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 6290107 6296226 - Bda027589.1 Bda14g00819 20870

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda14g00819 561 SUPERFAMILY PDZ domain-like 329 411 IPR036034 GO:0005515
Bda14g00819 561 Gene3D - 303 411 IPR036034 GO:0005515
Bda14g00819 561 SUPERFAMILY Trypsin-like serine proteases 96 298 IPR009003 -
Bda14g00819 561 Pfam Trypsin-like peptidase domain 128 265 - -
Bda14g00819 561 CDD PDZ_serine_protease 304 404 - -
Bda14g00819 561 PRINTS HtrA/DegQ protease family signature 236 253 IPR001940 GO:0004252|GO:0006508
Bda14g00819 561 PRINTS HtrA/DegQ protease family signature 129 141 IPR001940 GO:0004252|GO:0006508
Bda14g00819 561 PRINTS HtrA/DegQ protease family signature 345 357 IPR001940 GO:0004252|GO:0006508
Bda14g00819 561 PRINTS HtrA/DegQ protease family signature 199 223 IPR001940 GO:0004252|GO:0006508
Bda14g00819 561 PRINTS HtrA/DegQ protease family signature 157 177 IPR001940 GO:0004252|GO:0006508
Bda14g00819 561 Gene3D - 89 184 IPR043504 -
Bda14g00819 561 PANTHER PROTEASE DO-LIKE 9 77 560 - -
Bda14g00819 561 Pfam PDZ domain 306 406 IPR001478 GO:0005515
Bda14g00819 561 PANTHER - 77 560 - -
Bda14g00819 561 Gene3D - 185 295 IPR043504 -
Bda14g00819 561 Pfam PDZ domain 413 558 IPR041517 -
Bda14g00819 561 Gene3D - 412 561 IPR046449 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda14g00819 K25897 DEGP9; protease Do-like 9 [EC:3.4.21.-] - gmx:100817187 875.159
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda14g00819 Bda-Chr14:6290107 Bda14g01147 Bda-Chr14:10644562 0 dispersed
Bda14g00819 Bda-Chr14:6290107 Bda12g00512 Bda-Chr12:7522436 6.26E-11 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g706 Blo04g00740 . . . . . . . Cmo13g00928 Cmo18g00119 . . . . . Cpe20g00227 . . . . . . . . . . . . . . . Cone2ag0889 Cone16ag0121 . . Lsi02g00353 Csa01g00829 Chy12g01288 Cme12g01714 . . . Bda14g00819 . Bpe15g00630 . . Sed08g2488 . . Cma13g00902 Cma18g00151 Car13g00742 Car18g00145 Cpe09g01042 . Bhi08g01579 Tan05g2035 Cmetu12g0872 Lac10g0425 Hepe07g2245 . . Cla01g01391 Cam01g1452 Cec01g1487 . Clacu01g1476 Cmu01g1371 Cre01g1286 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004589 2 1 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 2 2 1 1 2 1 2 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda14g00819 Bda_Chr14 FPKM 7.014688 6.159893 4.221979 5.074901 2.698467 3.184722 2.660753 0.864883 0.840195