Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda14g00829 GCACCAAAATCCGGCGGAAAAATGGTTTCTAAGGTCATTTTTGCCATGGCTTTTACCACTCTATTTGTTGTAGTGATCTTCGTCTTGTTCCTCTTAATCTTTGTTCTTCTTCGGCCGAAGTCCTGGGCGAATAAGGTTGATACAATTTTTCAAAGAGAACATGCATTAAATCCTGCAGAACTGAAGAAAGTCGGAGGAAATTTGGGAGAGAGAAGTGTTGTTGAAAACGAGCTGAATGCGATTTGTATAAAAAATGACAAGGATGAATGTTTTACGAGTTTGTCAAAGAAACCTAGCGATGTAGAACAAGAAGAAGAACAGAAAGGAGTGAAGAACAGCCCAAAAGAATTGCAAAAGAAACTCAATCCTCAAGAATCTTTATGGCTATCCAATGAAACAGATCCTATATCAGATATTGAAGATCCTACTCCACCAATGGTTTTGGAAAAGAAAACTCAGTCACAAATTACTGACCCACTACCAATTCAGATTGAGAAGATTCCCCTGCCGCCACCTCTGCCGCTTTTCAGATCAAAAAGATGTCTTGTGAAGCCATCTCCGGCTCGTAAGAATGCCACTTCAGGCTCGGCAGTGAAAGCGGGGTTGGAGCTGAGAGCGAAAGTAAACAGCAAGAACAAGGCAGATGGGCTGGAAGGGGAAAAGGTGAAGCTGAAGCCGTTGCACTGGGATAAACTCACTTTGGCAACGGCTGATCATTCAGTAGTGTGGGATGAGATCCATGAAGATGGATCTTTGAGGTTTGATGATGATGAAATGGAGAATCTCTTTGGATACAACACTACAAGCAATAACCTCCAATTTCCTCGAAAAAACAATCTCTTATCAAGTTCAGTCAATTCCAATACTGGCCTGAAATCTCGAGTTTTTCTGCTGGAACCTCGGAAGTCTCAAAATGTGGCGATAGTGTTGAGATCTCTTGCCATTTCTCGCAAAGAAATTCTCGATGCCCTCGTCAATGGCCACGGACTTGATTCAGATACCTTAGAGAAACTTACCAGAGTTTCTCCAACCAAAGAAGAAGAAATCAAGATCCTGCAATTTACCGACAACCCAAATAAACTTGCGGATGCTGAATCTTTTCTCTATCAGATTCTTAGAGCCATTCCTTCTGCATTTTCCTGTTTTAAGGCGATGCTTTTCCGAGAAAATTACGATGTCGAAATTCTTCTTCTAAAAGAGTCTTTGGAGACAGTTGAATCGGGATGTAAGGAGCTCAGAGCCTGCAAGCTCTTTGTTAAGCTTCTTGAAGCCGTTCTCCGGGCTGGTAATCGAATGAATGCCGGGACTGCTAAAGGCAATGCTCAGGGATTCAATCTCAGTGCTCTTCAGAAGCTTTCAGATGTGAAAAGCAATGATGGAAAGACCACTCTTCTTCACTTTGTCGTTGAACAAGTAGCTCGATCTGAGGGACGACGATGCCAGAAAAACCTTAACCGTAACCTCAGCTATCAAAGAACTCGAACTGGAGAACCTGAATCAGAAAATCCTCTACCAGAAGATATTAACAAAGAATATCTAGATCTAGGATTACTAATCTTGAGAGAGCTAGGAACGGAACTAACTCATGTGAAGAAAGCAGCTACCCTCGACTACAATAGTTTCATCAATTTGAGCACCAATATTGAAGCTCGAGCATCGGAAACTAGTGGACTCGTCAAACAATGTGGCGATGGTGAGAGAAGTGGATTTGTGAGTGAAATGAAAGGGTTTTTAGAGGAATGTGAAGAAGAACTAAAGGCGGTGAGAGAAGAGCAGAGTAGGGTTATGGAATTAGTCAATAGAACATCAGAATATTTCCAAACAGAGGCTTCACAGGATAAGAGAGCTCACCCGTTTCAGCTTTTCTGCATTGTGAGAGACTTTCTCAAATTAGTTGATCAAGCCTGCATATACATTGATTGGAAACAGCGAAATCCAAGTCCGAGAGTGATTGATATCGACTCATCGCCTCCACTCTCACCTTTGAAAAGAGCAGCAATGAGATTCCCAGACTTTTATATACATCTAAAGTCAGACATGTCAAGTACATCAAGTGATACCGATGGTGATTTCTGA 2076 41.86 APKSGGKMVSKVIFAMAFTTLFVVVIFVLFLLIFVLLRPKSWANKVDTIFQREHALNPAELKKVGGNLGERSVVENELNAICIKNDKDECFTSLSKKPSDVEQEEEQKGVKNSPKELQKKLNPQESLWLSNETDPISDIEDPTPPMVLEKKTQSQITDPLPIQIEKIPLPPPLPLFRSKRCLVKPSPARKNATSGSAVKAGLELRAKVNSKNKADGLEGEKVKLKPLHWDKLTLATADHSVVWDEIHEDGSLRFDDDEMENLFGYNTTSNNLQFPRKNNLLSSSVNSNTGLKSRVFLLEPRKSQNVAIVLRSLAISRKEILDALVNGHGLDSDTLEKLTRVSPTKEEEIKILQFTDNPNKLADAESFLYQILRAIPSAFSCFKAMLFRENYDVEILLLKESLETVESGCKELRACKLFVKLLEAVLRAGNRMNAGTAKGNAQGFNLSALQKLSDVKSNDGKTTLLHFVVEQVARSEGRRCQKNLNRNLSYQRTRTGEPESENPLPEDINKEYLDLGLLILRELGTELTHVKKAATLDYNSFINLSTNIEARASETSGLVKQCGDGERSGFVSEMKGFLEECEEELKAVREEQSRVMELVNRTSEYFQTEASQDKRAHPFQLFCIVRDFLKLVDQACIYIDWKQRNPSPRVIDIDSSPPLSPLKRAAMRFPDFYIHLKSDMSSTSSDTDGDF 691
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 6373989 6376140 + Bda027601.1 Bda14g00829 20880

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda14g00829 691 MobiDBLite consensus disorder prediction 487 506 - -
Bda14g00829 691 MobiDBLite consensus disorder prediction 95 115 - -
Bda14g00829 691 Pfam Formin Homology 2 Domain 220 632 IPR015425 -
Bda14g00829 691 SUPERFAMILY Formin homology 2 domain (FH2 domain) 227 636 - -
Bda14g00829 691 PANTHER FORMIN-LIKE PROTEIN 7 686 - -
Bda14g00829 691 ProSiteProfiles Formin homology-2 (FH2) domain profile. 214 658 IPR015425 -
Bda14g00829 691 Coils Coil 571 598 - -
Bda14g00829 691 Gene3D Formin, FH2 domain 237 647 IPR042201 -
Bda14g00829 691 PANTHER FORMIN-RELATED 7 686 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
Bda14g00829 691 MobiDBLite consensus disorder prediction 95 127 - -
Bda14g00829 691 SMART it6_source 214 647 IPR015425 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda14g00829 - - - qsu:111999311 538.495
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda06g00283 Bda14g00829 CCT
Bda06g00573 Bda14g00829 CCT
Bda06g00283 Bda14g00829 ECH
Bda06g00573 Bda14g00829 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda10g01006 Bda-Chr10:44236078 Bda14g00829 Bda-Chr14:6373989 3.20E-142 dispersed
Bda14g00829 Bda-Chr14:6373989 Bda14g01277 Bda-Chr14:13667115 2.29E-89 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi12g386 . Blo15g00585 Bda06g00283 . . . . . Cmo11g01893 . . . . . Sed01g0110 Cpe15g00849 Cpe04g00822 Bhi05g01339 Tan02g0350 Cmetu11g1229 Lac12g0581 Hepe02g0228 . . Cla02g00195 Cam02g0212 Cec02g0208 Cco02g0202 Clacu02g0203 Cmu02g0200 Cre02g0533 Cone3ag1333 Cone10ag1279 . . . Csa07g00353 . Cme01g00431 Blo04g00593 . Bda14g00829 . . . . . . . . Cma11g01819 . Car11g01506 . . . . . . . . . . . . . . . . . Lsi11g01447 . Chy01g00434 .
Vvi17g677 Blo04g00750 . Bda06g00573 . . . . . . . Cma10g00155 . Car10g00146 Car11g00117 Sed08g1374 . . Bhi02g00383 Tan09g2193 Cmetu04g3167 . Hepe09g0163 . . . . . . . . . . . . . . . . . . Blo15g00283 . Bda14g00829 Bpe07g00815 Bpe15g00622 Bma03g00803 . . Cmo10g00166 Cmo11g00124 . . . . . Cpe18g00822 . . . . . . . . . . . . . . . Csa01g00187 Chy02g02546 Cme02g01930
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0019307 1 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda14g00829 Bda_Chr14 FPKM 6.057156 5.67962 4.504841 4.776815 3.291543 4.450426 3.036685 5.335879 4.970343