Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda14g00867 ATGCACGGCTTAAAGCATTCTCCCTTTAAGCTTGGTAGACATAAAACAGCAGAACCTAAAAATTCTGTTTCTTCTCAGTTAAACCCTTTTGACTCTGATGATGATTCGAAGGCAAAGCAGAATCATTCTTTGCCTAAGGCTCACTCCGACCCCGTCAAAACGAGTCTAACTGTTAGCCCCAATCCTTTTGATGATGATCAAGGAAAGGGGGCTCCCCCACCTTCAAATTCACTAAGTTGGTCTACGAGGAACAAGTACAAGAACGATTTCCGTGACGAGGGAGGATTGGAGAGCCAATCTGTGCAAGAATTGGAGAATTATGCAGTCTACAAGGCTGAAGAAACTACAAATTCAGTCAATGGATGCCTAAAAATTGCTGAGGAGATCCGAGAGGATGCTACCAAAACTTTGGTAACTTTGCATCAACAGGGCGAGCAAATTACCCGGGCCCATTTGGTTGCCGCCGACATTGATCATGATCTTAGTCGGGGAGAGAAGCTTCTGGGCAACCTTGGGGGAATGTTTTCCAAGACCTGGAAACCAAAGAAAACTCGTGAGATAACAGGCCCTGATATGAGAAGAGATGATTTGACGAGTAGAAAAGGCAACCACTTGGAGCAGAGGGAGAAGTTGGGATTGAGTCATGGAAACAACGCAAGGTCCAGCGCACGAACTCCATATCCCGAACCAACCGATTCCTATCAGAAAGTAGAGGTGGAAAAGAAGAAGCAAGACGATGCACTATCGGATTTGAGCAATATATTAGGAGAGCTCAAGGAAATGGCAATCGATATGGGAACTGAAATGGACATGCAAAACAAGGCTTTGGACAATTTCTATGACGAAACCGATGAAATAGGAAATCGCGTTAAAGACGCCAATCGACGCGGCCAGCGTTTGCTCAGGAAGTAG 912 45.29 MHGLKHSPFKLGRHKTAEPKNSVSSQLNPFDSDDDSKAKQNHSLPKAHSDPVKTSLTVSPNPFDDDQGKGAPPPSNSLSWSTRNKYKNDFRDEGGLESQSVQELENYAVYKAEETTNSVNGCLKIAEEIREDATKTLVTLHQQGEQITRAHLVAADIDHDLSRGEKLLGNLGGMFSKTWKPKKTREITGPDMRRDDLTSRKGNHLEQREKLGLSHGNNARSSARTPYPEPTDSYQKVEVEKKKQDDALSDLSNILGELKEMAIDMGTEMDMQNKALDNFYDETDEIGNRVKDANRRGQRLLRK 303
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 6682717 6684303 - Bda027642.1 Bda14g00867 20918

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda14g00867 303 MobiDBLite consensus disorder prediction 1 99 - -
Bda14g00867 303 PANTHER SYNAPTOSOMAL ASSOCIATED PROTEIN 15 303 - -
Bda14g00867 303 MobiDBLite consensus disorder prediction 181 246 - -
Bda14g00867 303 SUPERFAMILY SNARE fusion complex 235 301 - -
Bda14g00867 303 MobiDBLite consensus disorder prediction 32 46 - -
Bda14g00867 303 Gene3D - 226 303 - -
Bda14g00867 303 PANTHER TARGET SNARE COILED-COIL DOMAIN-CONTAINING PROTEIN-RELATED 15 303 - -
Bda14g00867 303 MobiDBLite consensus disorder prediction 181 213 - -
Bda14g00867 303 CDD SNARE_Qc 241 299 - -
Bda14g00867 303 SMART tSNARE_6 104 171 IPR000727 -
Bda14g00867 303 SMART tSNARE_6 233 300 IPR000727 -
Bda14g00867 303 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 238 300 IPR000727 -
Bda14g00867 303 Gene3D - 95 173 - -
Bda14g00867 303 MobiDBLite consensus disorder prediction 214 229 - -
Bda14g00867 303 MobiDBLite consensus disorder prediction 47 62 - -
Bda14g00867 303 CDD SNARE_SNAP25N_23N_29N_SEC9N 106 170 IPR044766 GO:0005484|GO:0031201
Bda14g00867 303 SUPERFAMILY SNARE fusion complex 99 169 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda14g00867 K18211 SNAP25; synaptosomal-associated protein 25 - cpap:110811172 397.897
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda10g01080 Bda-Chr10:44766563 Bda14g00867 Bda-Chr14:6682717 2.50E-20 wgd
Bda14g00867 Bda-Chr14:6682717 Bda07g01482 Bda-Chr7:27531899 2.00E-48 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g617 Blo04g00786 . . . . . . . Cmo13g01138 . . . Car10g00205 . . . Cpe04g01473 . . . . . . . . . . . . . . . . . . . . . . . . . Bda14g00867 . . Bma03g00844 . . Cmo10g00232 . Cma13g01086 . Car13g00924 . . Cpe18g00772 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001344 1 5 1 1 1 2 4 2 2 2 1 2 4 2 2 4 2 4 4 2 2 4 2 2 2 2 2 6 4 1 75
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda14g00867 Bda_Chr14 FPKM 1.547535 1.615984 0.96259 1.198375 1.484209 1.465962 2.259686 1.461845 1.704689