Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda14g00871 AATACAGAGATGAATCCCGATAAATTTACTCATAAGACCAATGAGATGATAGCTGGGGCTCATGAACTCGCTATGAATTCCGGTCATGCTCAATTCACTCCCCTTCATCTTGCAGTTTCTTTAATTAGTGATCCCAGTGGAATCTTTAGGCAAGCAATTTGCAATGCTAGAGGTGAAAACTCCCCTAAGGAAGTGGAGACAGTCTTAAATCGGGCTTTAAAGAAACTCCCATCTCAAACCCCTCCTCCGGATGAGATTCCAGCGAGTTCTTCTCTGATCAAAGTAATTAGAAGGGCTCAAGCGGCACAAAAAACAAGGGGGGACACCCATTTAGCCGTAGATCAGCTAATTCTTGGTCTTCTTGAAGATTCTCAGATTGGAGACTTGTTGAAAGAAGCAGGCGTTGCTTCTGCATCAGTGAAGTCTGAGGTTGAAAAGCTTCGTGGAAAAGAAGGGAAGAAAGTAGAGAGTGCTTCTGGAGACACTACATTTCAAGCTTTGAAGACTTATGGTCGAGATCTTGTTGAACAAGCTGGAAAGCTAGACCCAGTCATCGGGCGGGACGAAGAAATTAGAAGGGTGGTAAGAATTCTGTCAAGGAGAACAAAAAACAATCCTGTACTTATCGGAGAGCCTGGAGTAGGTAAAACTGCAGTGGTTGAAGGATTAGCTCAAAGAATTGTACGAGGAGACATCCCAAGTAACCTAGCTGATGTGAGGCTCATTGCATTGGACATGGGTGCTTTAGTTGCTGGAGCTAAATATCGAGGGGAATTCGAGGAGCGACTGAAAGCTGTGTTGAAAGAAGTAGAAGAAGCAGCTGGAAAAGTGATATTGTTCATTGATGAAATTCACTTAGTATTGGGTGCTGGCCGTACAGAGGGCTCTATGGATGCTGCCAATCTCTTCAAGCCAATGCTTGCTAGAGGACAGCTTCGTTGTATTGGAGCAACTACACTTGAAGAATACAGAAAATATGTGGAGAAAGATGCAGCATTTGAGAGACGATTTCAACAGGTGTATGTGGCTGAACCAAGTGTCCCAGATACAATCAGTATCCTTCGAGGGTTGAAAGAGAGATATGAAGGTCATCATGGTGTTAGAATACAAGATCGAGCTCTTATTGTTGCAGCTCAGCTTTCTAGTCGATACATTTCAGGTCGTCATCTTCCTGATAAAGCGATTGATTTAGTTGATGAAGCCTGTGCAAATGTCAGAGTCCAACTTGACAGTCAGCCAGAAGAAATTGATAACTTGGAAAGGAAGAGAATGCAGCTTGAAATTGAGCTTCATGCTCTTGAGAAGGAGAAGGACAAAGCTAGCAAAGCTCGTCTTATTGAAATTAAAACAAAAAAGAGAAGAGCTTCAGATTGCACTACAGAGGCTGAAAGAAGATATGATTTAGCAAGGGCTGCAGATTTGCGATATGGTGCAATCCAAGATGTGGAAACAGCCATTGCACGAATTGAAGGCAACACGGATGAGAACTTAATGTTGACAGAGATTGTCGGCCCTGAGCACATAGCAGAGGTTGTGAGCCGTTGGACTGGTATTCCTGTCACTCGACTTGGCCAGAATGAGAAAGAAAGGTTGATTGGGCTTGCTGAGAGGCTGCACAAGAGAGTGGTAGGTCAAGACAAAGCTGTTGATGCAGTTGCAGAGGCAGTCTTAAGGTCGAGGGCGGGTTTAGGAAGGCCGCAACAGCCAACTGGCTCCTTTCTCTTTCTAGGTCCTACTGGTGTCGGCAAGACTGAGCTTGCAAAGGCCTTGGCGGAGCAACTCTTTGACGATGAAAATCTACTTGTGCGAATTGACATGTCAGAGTATATGGAGCAACACTCTGTTTCTCGACTGATTGGTGCTCCTCCAGGTTACGTTGGACATGAAGAAGGTGGGCAACTTACAGAGGCGGTGAGGAGAAGACCTTACAGTGTTGTGCTTTTTGATGAAGTGGAGAAAGCTCACATCTCTGTCTTCAACACCCTTCTTCAAGTTTTAGATGATGGAAGATTGACAGATGGTCAAGGTCGAACCGTTGATTTCAGAAACACAGTAATTATTATGACTTCAAACCTCGGAGCCGATCATCTGCTGTCAGGTCTATTGGGTAAATTCACCATGCAAGTAGCTCAAGAGCGGGTTTTGCAAGAGTTTTTTAAACATGGATTTTGGGTTTGTTATCAGGTGAAAAGACACTTCAGGCCGGAGTTGCTCAATCGACTTGATGAAATAGTAGTCTTTGATCCTCTTTCACACGACCAACTGAGGAAGGTGGCTCGATTACAAATGAAAGAGGTTGCCAGCCGCCTTGCCGAGCGAGGTGTTGCCTTGGCCGTGACAGATGCAGCCTTGGACTATGTTTTGTCCGAGAGTTACGACCCAGTTTATGGTGCCAGACCAATCAGGAGATGGCTCGAGAAACATGTCGTCACAGAGTTGTCGAAAATGCTGATCAGAGAAGAAATCGACGAGAATTCAACAGTGTACATAGATGCAGGACCAACGGGGAGCAAGTTGATGTACAGGGTGGAGAAGAATGGGGGATTTGTGAATGCAGAAACAGGGAAGAAATCAGATGTTTTGATACAAATCCCAAATGGACCAAGAAATGATGCTGCACAGGCCGTGAAGAAGATGAAGATTCAGGAAATAGACGGTGACGAGGACATGGATGAACTGTAA 2682 44.74 NTEMNPDKFTHKTNEMIAGAHELAMNSGHAQFTPLHLAVSLISDPSGIFRQAICNARGENSPKEVETVLNRALKKLPSQTPPPDEIPASSSLIKVIRRAQAAQKTRGDTHLAVDQLILGLLEDSQIGDLLKEAGVASASVKSEVEKLRGKEGKKVESASGDTTFQALKTYGRDLVEQAGKLDPVIGRDEEIRRVVRILSRRTKNNPVLIGEPGVGKTAVVEGLAQRIVRGDIPSNLADVRLIALDMGALVAGAKYRGEFEERLKAVLKEVEEAAGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLARGQLRCIGATTLEEYRKYVEKDAAFERRFQQVYVAEPSVPDTISILRGLKERYEGHHGVRIQDRALIVAAQLSSRYISGRHLPDKAIDLVDEACANVRVQLDSQPEEIDNLERKRMQLEIELHALEKEKDKASKARLIEIKTKKRRASDCTTEAERRYDLARAADLRYGAIQDVETAIARIEGNTDENLMLTEIVGPEHIAEVVSRWTGIPVTRLGQNEKERLIGLAERLHKRVVGQDKAVDAVAEAVLRSRAGLGRPQQPTGSFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEYMEQHSVSRLIGAPPGYVGHEEGGQLTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGADHLLSGLLGKFTMQVAQERVLQEFFKHGFWVCYQVKRHFRPELLNRLDEIVVFDPLSHDQLRKVARLQMKEVASRLAERGVALAVTDAALDYVLSESYDPVYGARPIRRWLEKHVVTELSKMLIREEIDENSTVYIDAGPTGSKLMYRVEKNGGFVNAETGKKSDVLIQIPNGPRNDAAQAVKKMKIQEIDGDEDMDEL 893
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 6743680 6746860 + Bda027648.1 Bda14g00871 20922

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda14g00871 893 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 518 831 IPR027417 -
Bda14g00871 893 Pfam AAA lid domain 347 446 IPR041546 -
Bda14g00871 893 CDD AAA 543 702 - -
Bda14g00871 893 ProSitePatterns Chaperonins clpA/B signature 2. 603 621 IPR028299 -
Bda14g00871 893 ProSiteProfiles Clp repeat (R) domain profile. 6 150 IPR004176 -
Bda14g00871 893 Pfam ATPase family associated with various cellular activities (AAA) 207 320 IPR003959 GO:0005524|GO:0016887
Bda14g00871 893 PANTHER CHAPERONE PROTEIN CLPB3, CHLOROPLASTIC 7 845 - -
Bda14g00871 893 Pfam Clp amino terminal domain, pathogenicity island component 20 53 IPR004176 -
Bda14g00871 893 Pfam Clp amino terminal domain, pathogenicity island component 99 149 IPR004176 -
Bda14g00871 893 CDD AAA 185 340 - -
Bda14g00871 893 Pfam C-terminal, D2-small domain, of ClpB protein 750 830 IPR019489 -
Bda14g00871 893 Gene3D - 153 346 IPR027417 -
Bda14g00871 893 Coils Coil 409 443 - -
Bda14g00871 893 Gene3D - 6 151 IPR036628 -
Bda14g00871 893 SMART AAA_5 202 347 IPR003593 -
Bda14g00871 893 SMART AAA_5 569 715 IPR003593 -
Bda14g00871 893 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 573 591 IPR001270 GO:0005524
Bda14g00871 893 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 647 665 IPR001270 GO:0005524
Bda14g00871 893 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 680 694 IPR001270 GO:0005524
Bda14g00871 893 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 618 636 IPR001270 GO:0005524
Bda14g00871 893 Pfam AAA domain (Cdc48 subfamily) 569 744 IPR003959 GO:0005524|GO:0016887
Bda14g00871 893 Gene3D - 750 845 - -
Bda14g00871 893 SMART ClpB_D2_small_2 750 839 IPR019489 -
Bda14g00871 893 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 163 517 IPR027417 -
Bda14g00871 893 ProSitePatterns Chaperonins clpA/B signature 1. 298 310 IPR018368 GO:0005524
Bda14g00871 893 Gene3D - 499 749 IPR027417 -
Bda14g00871 893 PANTHER ATP-DEPENDENT CLP PROTEASE 7 845 - -
Bda14g00871 893 SUPERFAMILY Double Clp-N motif 7 160 IPR036628 -
Bda14g00871 893 Gene3D - 347 460 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda14g00871 K03695 clpB; ATP-dependent Clp protease ATP-binding subunit ClpB - pvy:116134249 1520.75
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda11g01719 Bda14g00871 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda11g01719 Bda-Chr11:51627060 Bda14g00871 Bda-Chr14:6743680 0 dispersed
Bda13g01707 Bda-Chr13:40414993 Bda14g00871 Bda-Chr14:6743680 0 dispersed
Bda14g00871 Bda-Chr14:6743680 Bda15g00698 Bda-Chr15:10397329 0 dispersed
Bda14g00871 Bda-Chr14:6743680 Bda14g00873 Bda-Chr14:6764480 0 proximal
Bda14g00870 Bda-Chr14:6725817 Bda14g00871 Bda-Chr14:6743680 1.25E-108 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g643 Blo04g00788 . . . Bpe12g00459 . Bma06g00155 . Cmo13g01128 . . . . . . Cpe20g00068 . Bhi02g00694 Tan09g2052 Cmetu02g0330 . . . . Cla06g01547 Cam06g1708 Cec06g1768 Cco06g1769 Clacu06g1675 Cmu06g1621 Cre06g2434 Cone2ag0814 Cone16ag0200 . . Lsi02g00111 Csa01g00590 . Cme12g01952 . . Bda11g01719 Bda14g00871 . Bpe15g00585 Bma03g00847 Bma08g00280 Sed08g2114 . . Cma13g01080 . Car13g00917 . . . Bhi08g01100 Tan05g2372 Cmetu12g0960 Lac10g0140 Hepe07g2473 . . Cla04g01163 Cam04g1221 Cec01g1732 Cco01g1778 Clacu04g1248 Cmu04g1227 Cre01g1523 Lsi06g01422 Csa01g00282 Chy02g02452 Cme02g01838
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002248 4 2 1 2 2 2 4 2 2 3 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 63
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda14g00871 Bda_Chr14 FPKM 48.833519 54.425003 66.718407 64.608017 41.309284 39.860588 40.345589 70.805679 65.364777