Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda14g00888 ATGCGTAATCATGGTCCTCACTTTTTGCAGGCTCCTCACAAGCCTGTGCCACCTTCATATCAGCAGCTCCCAGCCGCTTCACGGCCTCATTTTCGATCAGTTCTTCCTCAGTCTCTACCCCCACCTCCGTCTCTTCCTCAACCTCCTAGTCATGTTTACCAGCATGGTCCTCCTGGTGCTCATAGTGTTATCCCTCAAGCACCATTCATGCAAGTTCAATCTCAGGGGATAGCGAATATTAATCAATCTTATTTTCATACACAACCTCCACTTCATGGAAGCACCTTGTTCCCGCCAGTTTACTTAAATGCGAAGCAGAATTCTTTAGCTCCTCCTCAATCAGGAGTCCACACAGTGCATAATGCACCACATCCCAGAGCCTCTTTTATTGGTAATCCTCCTCCGGAATTTATTCATCCAGCATCTTTTAATGTATTACCTCCTCATCATACTTCACCAGTGGAAACAATATACAGAGCTCCCGTGAATGTGGTTCCACAACATGGTCATGGTGGCATACAAGCCCTTCAGAACCTTCCTCTACCACCATATCCACCACGACCCCCAGCAACTTTTAGTTTTTCTCCTCCTGCTCCCACTACATCTTCTGATATAGAGAATTCAGCTTTTGGAGGTTCAGTTATTCCTTCTGTAACTCCCCCACCACCATCCTCTCCTCCACCTCTACCACCCTCTCCCCCGCCCTCCATTTCTCTTCCATCATCATTTTCAGTGGCCAGCGTTTCGGTTTCCAACGTGACATGCATATCTCTCAATCAGGTCAGATATAATGGACCTATGGGCAATCATCTTAATCAAAAAGGTGAAAGTGGCTGTCTTCCTGTTGGTTCTATGATGAATGATGAGTTGTCATCTGATAGAAGTGAGATATTGGACCGTCCTTCACCTCCATCTAAACCAACAGAACAAAACAATGTGAAGGTGGAAACATTATGCCAAAGTATTGCCGAGAATGTTCCTGTTATTGAAAAGATGGCTTGCCAGAATGAGTCTCGAAACCTTCCATTTGGTGGTGAACCAGGAAGTGGGGATGCAATTACAGATGAGTGTTCATCGAGAGCTTCACAAGAGTGCAACCAGCCAAGTTGTTTGATTGTTTCAGCTGGGAACAATACACCTGCTGATTCTGACATGGAGATGGAAGACGATATCACCCCGGTTCTTAAAGAACAAGGACTAATTGAGTCAATTCAAGTTATAAATCATGAATACATGGATTACAGCAGAAATGAACCGGTACAAGGATCACATAGTCCTTCCACGTGCAGCGCTGCTAACGGTGTCTCCTATGAGAGGGTGTCTTGTTCTAGTCCTTTGAGTCGGGGGAAACAAGAAGGTAGGAATTCTGATCCATATTTCTCTTTGTTGAACAAATGTCTGATATGTGAAAAAAATGTTAATAATATGACTTGGTATCTTACTTGTGCAGCTGTTGAAGCTGACGATGCTGATAAGTCTAGTCAACTAATTAAAAGTAGCAGTCCATTCAGGCTAATTCAGGTCTATGCTTCTGATGATGATTCAGAAAATGACAGGGAGCCTTGCAACAGGGAAGTTAGTCCTATGGCAGTATTGCCAATTGTTGCAGCTTCTGGTACGCTGTCTAAAGTAACTACTCCGAATAATTTCACCAATATGAAAATAAAGAATTCAAACTGGGATGTAGAAGAGATCGATCCTCTCCCAGAATCATTGTTATCTGACCAGGATTCTGAGGTTTTAACTAAGTATCGGAGAGAAGCTAATAAAACAGGTGAAGCAAGTGAGATAAAGGTTGATGATGGGGGAGGGCATCAAACATCTGTTTGTGGTAATATTGCCTGTAAAGGTGATAAATCTGGGAATGATATGGAAGAGAAGAAGGCTAAGCTTGTGACTAGTCCTTTGAAAGTAGATGAATTTGGAAGACTGGTCAGAGAAGGTTTTATTGATTCTGACTCTGATGATTCAAGCTATATGAGGAGGGATTATAAAAGAGCCCGAAGTCGAAACCAGAGTCAAAGCCATTCTCCTGCAGATAGGAAGAGGAAGCGGAGGAGTCCAAGAAGGAGAAGGGAAAGACGAAGTCGGTCTCCATCTCGCAGTTGGTCTCCGAGGATCCAAAGAAACAGAAATAGATCGCCTTTTAGGCGAGGAAGGGAGTTCAGCAGCAAAGCCAGGCGGGAAAGAGGTCAAGTTCCAGTATGCTTTGACTTCAATAGAGGTAGGTGCTATCGTGGAGCATCATGTCACTATATGCACCATGAATCAAGCAAGAATATTCGAACAAGATATAACCGGGGCAAACAGCAGTATACTGATGTTCGTCTTACTTCAATCAAGAATCAAAACTCATCAGCGGAACCAGAAGTGTTAGATATTGAGCATAATGAAGTTAAGACTGCAAGTGAGCCACTCTCTCATGATTTTCCTTCTAAGGACGGAGGCATTGATTGGAAAGAACAAGAATACACGAGGGATGGTGTTGAACTCAATGTTTTAGATAAGAATAATGGATTAACTGATTCTGATTTATGTAGACATCAGAATTCCGGGGACAGAGCTGGTACTGTTGAGGAAGCTCAAGTATTACGAGAAAAACATGATGAGGTTTCTTCCCTTGTTCCCTTGGAGGCTGTGGAGCCTGTTCCTTCACTACCAAGTAAAGGAATTTCTCATGAACTTACCCTTGATTTCGATGCCACAAAGCCAGGCGGAGATGCATTACAGGATGGGGTACCTTCGGTTACGAATTCAGTAATTTTCCCATCACAATCTAATTATGTGGCAAAGCTTGACTATCCTTATTGTGCTGCTCCTCAGAGATTTTCTATTAGTGAGCCTTTTCCTGACAAGATCTCACCTCGTCAGTCTGGGTTTTGCACAAGTTCTTCTATCGAACAGGTTTTATCTCAACGACCTTCACCACATTATCCTGCTATGAAAGAGTTCTCTCATCTTACTCATCCAGCTATTGAGTTTTCACATTCTCCCTTTCAACTTCCTCCTCCACCACCACTTCCCCTTCCCCAAAGTGCAAGTACTACAAATGTGCCACAGCTGCCAAGGGATTATACCCCGATGCCTCAGGCTACATCTTTCCCTTTTCAATTTACTCAGACTGAAAATTTCGGATATCCTCAAGTTTCCTCTTTTAACCAGCATTCACAAACCTCTGGGTTGCTTAGTTCCTCTTGGATCAGGCCACTACCTCATCAACCATTGCATGATTCGACTCCAAATGCAGGAACTTCTAATTATGGTACTTCTTTCCAGTTGAAGAATGCCTTCCTTCCAATGCCAGAACCTCAAAGGCCTTTTTCAAACATGAGTGATTTTCCTGGTAAGCCTCCAGGTGTGGATTACCCACCTAACCTATCAATTTGTGGCCTTAGTCTCAAGAGAGAAGAACATTTAATGCAGAATGCTGAGGCTTTAGATTCGTCAAGTCTTTTGGCTCAGAGAAACTTGAACCCAGAATGTAGACCTCTTTCACATGAATTATTGGCGGACAAAATGCAATATTCTTTTGACAAAAACTTTCATTCTGGTGAGTTACGGAAATCGTCCTCCCAAATTCATCCTAATTCAGAGTTTCAACCATTAAGGTTCAATCTGCAAGTTGCTGCAGATGGCAGTCAGTTGGGATTATCTGAGGCTGGTTCTGTTTCTCTACCCTTTCCAACTTCTTTTCCTGATTTTGTGGGATCAAGATTTCCATCTCATCACAATCCTTATGCTTCTACGTTTGAGAAGCCACTTCCTTTTAACTTTAGTGGCGTTTGGAAGCAGAGAGATGACACACCCAGCAGTAATAAAAGTGGTACTGACTTTTGTTTGAATGTTCAAGTTGGCGAGCAAGGCTTTGCCAGTGTTGGATCTAAACAAACTACAGCATCTCCCTCTTCAACTACAGCTATTGGGCAGGTTCTGCATAAGTTAGGCACTGACCAGTATGATCCACTTCTTGACTGCATTGAGCCATCTTCTTCACTCAGGAAAGCAAATATTGTCAAAGTAAGAGAACAAACTGGTGACTCTGACATCATAATGCGATCCAGTGGTTTGCATAAGCCATTGTATTTTGAAGAGAACGTGGAGGCTGGCGCTGATGCTTCATCCACATCGAGAAATGATGAATTTGGGGAGAGTGCAGATGCAGAAGTAGGTGCTGTTGAGAACCAGAGCCAAGGTGAAGCAAATTTGACTGGTGGAGAAATTGAAATCGATCAGAGTAAGTCTGAAGGGAAGAAAAAGAAGAGCAAAAGTTTTAGATCAACAAAGCTTTTTAAGATTTCCATTGCAAATTTTGTAAAGGAGGTTCTCAAGCCATCTTGGAGGCAAGGTAACATGAGTGAAGAAGCTTTTAAGACTATTGTTAAGAAGAGTGTGGAAAAGGTTGCAGGAGCTATGAAGAGCCATCATATACCGAAGTCCCAGGCCAAAATAAATCGTTACATTGACTCGTCACAGCGAAAACTCATGAAGCTTGTTATGGTAATTCTTCTTTTTTTAATTCCAAAGAATTCCATGATTGGTGCGAGTCATGTTAAGTTATATACAGTATATACATTTCCACAACATATTTTCCAATGCCAAGAAAATTCTAGATTGTTAAGTTGCATTTTTATCGATGGTTTATAA 4644 42.33 MRNHGPHFLQAPHKPVPPSYQQLPAASRPHFRSVLPQSLPPPPSLPQPPSHVYQHGPPGAHSVIPQAPFMQVQSQGIANINQSYFHTQPPLHGSTLFPPVYLNAKQNSLAPPQSGVHTVHNAPHPRASFIGNPPPEFIHPASFNVLPPHHTSPVETIYRAPVNVVPQHGHGGIQALQNLPLPPYPPRPPATFSFSPPAPTTSSDIENSAFGGSVIPSVTPPPPSSPPPLPPSPPPSISLPSSFSVASVSVSNVTCISLNQVRYNGPMGNHLNQKGESGCLPVGSMMNDELSSDRSEILDRPSPPSKPTEQNNVKVETLCQSIAENVPVIEKMACQNESRNLPFGGEPGSGDAITDECSSRASQECNQPSCLIVSAGNNTPADSDMEMEDDITPVLKEQGLIESIQVINHEYMDYSRNEPVQGSHSPSTCSAANGVSYERVSCSSPLSRGKQEGRNSDPYFSLLNKCLICEKNVNNMTWYLTCAAVEADDADKSSQLIKSSSPFRLIQVYASDDDSENDREPCNREVSPMAVLPIVAASGTLSKVTTPNNFTNMKIKNSNWDVEEIDPLPESLLSDQDSEVLTKYRREANKTGEASEIKVDDGGGHQTSVCGNIACKGDKSGNDMEEKKAKLVTSPLKVDEFGRLVREGFIDSDSDDSSYMRRDYKRARSRNQSQSHSPADRKRKRRSPRRRRERRSRSPSRSWSPRIQRNRNRSPFRRGREFSSKARRERGQVPVCFDFNRGRCYRGASCHYMHHESSKNIRTRYNRGKQQYTDVRLTSIKNQNSSAEPEVLDIEHNEVKTASEPLSHDFPSKDGGIDWKEQEYTRDGVELNVLDKNNGLTDSDLCRHQNSGDRAGTVEEAQVLREKHDEVSSLVPLEAVEPVPSLPSKGISHELTLDFDATKPGGDALQDGVPSVTNSVIFPSQSNYVAKLDYPYCAAPQRFSISEPFPDKISPRQSGFCTSSSIEQVLSQRPSPHYPAMKEFSHLTHPAIEFSHSPFQLPPPPPLPLPQSASTTNVPQLPRDYTPMPQATSFPFQFTQTENFGYPQVSSFNQHSQTSGLLSSSWIRPLPHQPLHDSTPNAGTSNYGTSFQLKNAFLPMPEPQRPFSNMSDFPGKPPGVDYPPNLSICGLSLKREEHLMQNAEALDSSSLLAQRNLNPECRPLSHELLADKMQYSFDKNFHSGELRKSSSQIHPNSEFQPLRFNLQVAADGSQLGLSEAGSVSLPFPTSFPDFVGSRFPSHHNPYASTFEKPLPFNFSGVWKQRDDTPSSNKSGTDFCLNVQVGEQGFASVGSKQTTASPSSTTAIGQVLHKLGTDQYDPLLDCIEPSSSLRKANIVKVREQTGDSDIIMRSSGLHKPLYFEENVEAGADASSTSRNDEFGESADAEVGAVENQSQGEANLTGGEIEIDQSKSEGKKKKSKSFRSTKLFKISIANFVKEVLKPSWRQGNMSEEAFKTIVKKSVEKVAGAMKSHHIPKSQAKINRYIDSSQRKLMKLVMVILLFLIPKNSMIGASHVKLYTVYTFPQHIFQCQENSRLLSCIFIDGL 1547
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 6880600 6886130 - Bda027667.1 Bda14g00888 20939

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda14g00888 1547 MobiDBLite consensus disorder prediction 35 53 - -
Bda14g00888 1547 MobiDBLite consensus disorder prediction 196 214 - -
Bda14g00888 1547 MobiDBLite consensus disorder prediction 108 129 - -
Bda14g00888 1547 PANTHER EXPRESSED PROTEIN 3 1499 - -
Bda14g00888 1547 PANTHER PROTEIN FRIGIDA-ESSENTIAL 1 3 1499 - -
Bda14g00888 1547 MobiDBLite consensus disorder prediction 655 678 - -
Bda14g00888 1547 MobiDBLite consensus disorder prediction 679 697 - -
Bda14g00888 1547 MobiDBLite consensus disorder prediction 179 195 - -
Bda14g00888 1547 MobiDBLite consensus disorder prediction 1369 1420 - -
Bda14g00888 1547 MobiDBLite consensus disorder prediction 655 727 - -
Bda14g00888 1547 MobiDBLite consensus disorder prediction 285 312 - -
Bda14g00888 1547 MobiDBLite consensus disorder prediction 173 235 - -
Bda14g00888 1547 MobiDBLite consensus disorder prediction 216 235 - -
Bda14g00888 1547 MobiDBLite consensus disorder prediction 588 608 - -
Bda14g00888 1547 MobiDBLite consensus disorder prediction 1 64 - -
Bda14g00888 1547 Gene3D - 726 787 - -
Bda14g00888 1547 ProSiteProfiles Zinc finger C3H1-type profile. 730 757 IPR000571 GO:0046872
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda14g00888 - - - qsu:112027887 744.962
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda10g00390 Bda-Chr10:35782471 Bda14g00888 Bda-Chr14:6880600 7.22E-06 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g457 Blo04g00798 . . . . . . . . . . Cma11g00215 Car10g00275 Car11g00194 Sed12g2017 . Cpe04g01453 Bhi02g00087 Tan09g2029 Cmetu02g1493 . Hepe09g0282 . . . . . . . . . Cone2ag0794 Cone16ag0215 . . . . . . . . . Bda14g00888 . Bpe15g00571 . . . Cmo10g00311 Cmo11g00217 . . . . . . . . . . . . . . . . . . . . . Csa01g00305 Chy02g02433 Cme02g01821
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009616 1 1 0 0 1 1 2 1 1 1 1 1 2 2 1 2 1 0 2 1 1 1 1 1 1 1 1 1 2 1 33
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17072 None None None None Bda TF