Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda14g00890 ATGGGAAGAGGGAGAGTAGAGCTGAAGAGGATAGAGAACAAAGTTAACAGGCAGGTGACATTTGCCAAGAGAAGAAATGGGTTGCTCAAGAAAGCTTATGAACTCTCAGTTCTTTGCGATGCTGAAGTTGGTCTAATCATCTTCTCTAACCGTGGCAAGCTTTATGAGTTCTGTAGCAGCTCTAGCATGATGAAAACACTTGAGAAATATCGAAGTTACACTTATGGTAGCAGACAAGGTAGTGGATCACTCAATGAAAACCAGGAGAACAGTCTGGATGGATATTTGAACTTAAAAGCTGCAGTTGAGGTCCTACAGCGTGCTCAGAGAAACATTCTGGGGGAAGATCTGGTCGATTTGAATAAGAACCAACTCGAACAACTTGAGGATCAATTAGAGGTATCCTTGATGCGTGTCAGGTCCAAAAAGGTGATACGTTTTTGCATACGCACATACGTATACGTATACATATACATAAACATATATTCATGTCAGCTGGTATATGGGTGCTGGTGA 516 41.67 MGRGRVELKRIENKVNRQVTFAKRRNGLLKKAYELSVLCDAEVGLIIFSNRGKLYEFCSSSSMMKTLEKYRSYTYGSRQGSGSLNENQENSLDGYLNLKAAVEVLQRAQRNILGEDLVDLNKNQLEQLEDQLEVSLMRVRSKKVIRFCIRTYVYVYIYINIYSCQLVYGCW 171
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 6909384 6912478 + Bda027669.1 Bda14g00890 20941
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda14g00890 171 Pfam K-box region 87 143 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bda14g00890 171 SUPERFAMILY SRF-like 2 78 IPR036879 GO:0003677|GO:0046983
Bda14g00890 171 Coils Coil 118 142 - -
Bda14g00890 171 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Bda14g00890 171 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Bda14g00890 171 Gene3D - 13 93 IPR036879 GO:0003677|GO:0046983
Bda14g00890 171 CDD MADS_MEF2_like 2 79 IPR033896 GO:0000977|GO:0045944
Bda14g00890 171 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Bda14g00890 171 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 144 - -
Bda14g00890 171 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Bda14g00890 171 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Bda14g00890 171 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Bda14g00890 171 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Bda14g00890 171 PANTHER DEVELOPMENTAL PROTEIN SEPALLATA 1 1 144 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda14g00875 Bda-Chr14:6779849 Bda14g00890 Bda-Chr14:6909384 1.08E-120 transposed
Bda10g01107 Bda-Chr10:45092866 Bda14g00890 Bda-Chr14:6909384 4.66E-51 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17073 PF01486 K-box 1.50E-13 No_clan Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda14g00890 K09264 K09260 han:110917628 206.838