Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda14g00891 ATGGGGAGGGGAAGAGTGCAGTTGAAGAGGATCGAGAACAAGATCAATCGGCAAGTGACGTTTTCGAAGAGAAGGTCTGGGTTGGTGAAGAAAGCCCATGAAATTTCTGTTTTGTGCGACTCGGACGTTGCTCTGATCGTCTTTTCTACCAAGGGGAAGTTGTTCGAGTACTCCACTAATTCCCGCATGGAAAAGATCATCGAACGGTACGAGAGGTGTACATTCAGAGAACTTCAGGTTCATGCCATAAGCAAGATTTACATTTCTTTCACTAGTGACGAAATGCGTAATCCGTTGTCGATTGGGTTTGATAGTAGAATCAGTGCTAAACGATCTACTGCTAATGTTCTTTACAGGAAATTTATGGGAGAAAATCTCGAATCATTAAGCATCAAAGAGCTTCAAAACTTGGAGCAGCAGCTTGATTCTGCCCTGCGACACATAAGAAGAAGAAAGGTAGAATTCTGA 468 42.95 MGRGRVQLKRIENKINRQVTFSKRRSGLVKKAHEISVLCDSDVALIVFSTKGKLFEYSTNSRMEKIIERYERCTFRELQVHAISKIYISFTSDEMRNPLSIGFDSRISAKRSTANVLYRKFMGENLESLSIKELQNLEQQLDSALRHIRRRKVEF 155
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 6915385 6917159 + Bda027670.1 Bda14g00891 20942
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda14g00891 155 Pfam K-box region 118 153 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bda14g00891 155 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Bda14g00891 155 Coils Coil 131 154 - -
Bda14g00891 155 CDD MADS_MEF2_like 2 74 IPR033896 GO:0000977|GO:0045944
Bda14g00891 155 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL8 1 153 - -
Bda14g00891 155 Gene3D - 13 82 IPR036879 GO:0003677|GO:0046983
Bda14g00891 155 ProSiteProfiles K-box domain profile. 88 155 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bda14g00891 155 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Bda14g00891 155 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Bda14g00891 155 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Bda14g00891 155 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Bda14g00891 155 PANTHER MADS BOX PROTEIN 1 153 - -
Bda14g00891 155 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Bda14g00891 155 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Bda14g00891 155 SUPERFAMILY SRF-like 2 85 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda11g01170 Bda-Chr11:12050423 Bda14g00891 Bda-Chr14:6915385 4.30E-60 dispersed
Bda14g00891 Bda-Chr14:6915385 Bda07g01843 Bda-Chr7:35769626 1.84E-47 dispersed
Bda14g00891 Bda-Chr14:6915385 Bda10g01107 Bda-Chr10:45092866 2.74E-56 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17074 PF01486 K-box 1.90E-12 No_clan Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda14g00891 K09264 K09260 vvi:100232952 182.956