Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda14g00899 ATGGCTCAAGATGCTTCTCAAAGTGCTGAATCACCGCGACCGCGATCTGGTCTCTTGCGAGACCAGGTCCAATTGGTTAAGAAAAAGGACTCAGACCGCTATGAGATTGTTCCAATCAAAGATTCCCTTTCGTTTGAGAAAGGTTTTTATATTGTAATCCGAGCATGCCAATTCTTGGCTCAAAAGAATGAGGGGATAACATTTGTAGGAGTAGCAGGTCCCTCTGGAGCTGGGAAGACTGTGTTTACTGACAAGGTGCTCAATTTTATGCCGAGCATAGCTGTCATTACGATGGATAATTACAATGATGCTAGTCGTATCATTGATGGCAATTTTGATGACCCGCGCTTAGCGGATTACGACACCTTGCTTGAAAATATAAATGGTCTAAAAGCAGGGAAATCTGTTCAGGTTCCTCTTTATGATTTCAAGACTAGCTCTCGCATAGGTTACAGGACAGTTGAAGTCCCCAGTTCTCGAATTGTGATTATCGAGGGCATTTATGCTTTAAGTGAAAAATTGCGGCCTTTGCTAGATCTTCGTGTATCAATTACCGGTGGAGTTCACTTTGATCTTGTCAAACGTGTTTTACGTGATATTCAACGTGCAGGACAAGAACCTGAAGAAATAATTCATCAAATTTCAGAAACAGTATATCCTATGTACAAAGCATTCATTGAACCTGATCTTCAAACAGCGCACATAAAAATCACCAACAAGTTTAATCCATTTACAGGATTCCAAAATCCCACTTATATTTTGAAGTCAACAAAGGCAGTAACTGTGGATCAAATCAAGGCTGTTGTTTTGGATGATCACAAAGAAACTACAGAGCAAACCTATGACATTTACCTTCTGCCTCCTGGCGAAGATCCTGAAGCATGTCAGTCATATCTGAGGATGAGGAACAGGGATGGCAAATACAATCTCATGTTTGAGGAGTGGGTTACTGATATCCCATTCATAATATCGCCAAGAATAACTTTTGAGGTTAGTGTGCGCCTTCTTGGAGGCCTTATGGCATTGGGATATACCATTGCAACGATCCTGAAAAGAAGTAGCCATGTCTTCTCTGATGATAGGGTGTGTGTAAAGACAGATTGGTTAGAGCAACTCAATCGTCAATACATTCAGGTGCAAGGAAGAGATCGATCATACGTGAAACATATTGCGGAGCAGCTGGATTTGGATGGGTTTTACATTCCTAGAACTTACATAGAACAAATTCAGCTGGAGAAACTTGTAAATGATGTTATGGTAAGCCTTTTCCATCTCATTTTTCCAATTTGTTCTTATGCAGGGGTTAACATTGTCAGTTTCCAGGCATTGCCAGATGATTTGAAAACAAAGCTCAGCATTGATGACGAAGTAGCTTCAAGCCCCAAAGAAGCGCTTTCCCGAGCTTCTGCAGATAGAAGAACAAAGTATCTCAAGAGTGGAATGTCACAATCATATTCAAATCAGAGGGAAAGAAGCCTTCCCAAGCTGACAAAACTTGCTGTTAATAATAGAAGGTTTGATGGGACAACCCTTGAATCACCTGCAACGCTCACAAACCAGGGGGTCATCACTCAACTGTCGGAACAAATTTCAACGCTCAATGAGAGAATGGATGAGTTTACGTCTCGTATTGAAGAGCTAAATTCCAAGTTTTCCAACAAAAGAGTGTCAGCCAGCCAACAGAACTTGGCTTTACATTCTGATGCCTGTAATGGGTCAGGACCTGCTTCATATTTTGTGTCAAATTTGAGCAATGGTTCACTGACTGGATCACTACTTCCCCATTCCTCATCTTCCTCTCAATTGGCCAAGGAGTCTGCTTTGGTGGACGAGATTCTGAACATTGCACGTTCACAAAGGCAAATCATGCATCAAATCGATAGTATGAGCAATATTCTTCGTGAATCTTCTGACGAGAGGTTACGCCAAGCAAGAACTGGTGGAACAAGCAGAATAGCTGACCTCGACTCAGTCACTACCCCTCTTATTCTGACGCTGGCAATCGGCAGTATCGGACTTCTATTGTTCAAGGCTCTAAATTCATACAAGTAA 2052 41.72 MAQDASQSAESPRPRSGLLRDQVQLVKKKDSDRYEIVPIKDSLSFEKGFYIVIRACQFLAQKNEGITFVGVAGPSGAGKTVFTDKVLNFMPSIAVITMDNYNDASRIIDGNFDDPRLADYDTLLENINGLKAGKSVQVPLYDFKTSSRIGYRTVEVPSSRIVIIEGIYALSEKLRPLLDLRVSITGGVHFDLVKRVLRDIQRAGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKITNKFNPFTGFQNPTYILKSTKAVTVDQIKAVVLDDHKETTEQTYDIYLLPPGEDPEACQSYLRMRNRDGKYNLMFEEWVTDIPFIISPRITFEVSVRLLGGLMALGYTIATILKRSSHVFSDDRVCVKTDWLEQLNRQYIQVQGRDRSYVKHIAEQLDLDGFYIPRTYIEQIQLEKLVNDVMVSLFHLIFPICSYAGVNIVSFQALPDDLKTKLSIDDEVASSPKEALSRASADRRTKYLKSGMSQSYSNQRERSLPKLTKLAVNNRRFDGTTLESPATLTNQGVITQLSEQISTLNERMDEFTSRIEELNSKFSNKRVSASQQNLALHSDACNGSGPASYFVSNLSNGSLTGSLLPHSSSSSQLAKESALVDEILNIARSQRQIMHQIDSMSNILRESSDERLRQARTGGTSRIADLDSVTTPLILTLAIGSIGLLLFKALNSYK 683
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 7003994 7008239 + Bda027679.1 Bda14g00899 20950

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda14g00899 683 Coils Coil 523 550 - -
Bda14g00899 683 PRINTS Uridine kinase signature 133 148 - -
Bda14g00899 683 PRINTS Uridine kinase signature 66 83 - -
Bda14g00899 683 PRINTS Uridine kinase signature 225 238 - -
Bda14g00899 683 PRINTS Uridine kinase signature 189 199 - -
Bda14g00899 683 SUPERFAMILY CYTH-like phosphatases 263 408 IPR033469 -
Bda14g00899 683 Pfam CYTH domain 267 394 IPR023577 -
Bda14g00899 683 Pfam Phosphoribulokinase / Uridine kinase family 68 237 IPR006083 GO:0005524|GO:0016301
Bda14g00899 683 PANTHER URIDINE KINASE 6 420 - -
Bda14g00899 683 PANTHER URIDINE KINASE 441 671 - -
Bda14g00899 683 PANTHER URIDINE-CYTIDINE KINASE C-LIKE ISOFORM X1 6 420 - -
Bda14g00899 683 Gene3D - 67 249 IPR027417 -
Bda14g00899 683 ProSiteProfiles CYTH domain profile. 246 411 IPR023577 -
Bda14g00899 683 CDD UMPK_like 68 240 - -
Bda14g00899 683 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 64 239 IPR027417 -
Bda14g00899 683 PANTHER URIDINE-CYTIDINE KINASE C-LIKE ISOFORM X1 441 671 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda14g00899 K00876 udk, UCK; uridine kinase [EC:2.7.1.48] - zju:107418915 1071.23
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda09g00447 Bda-Chr9:5882164 Bda14g00899 Bda-Chr14:7003994 3.00E-14 dispersed
Bda13g01653 Bda-Chr13:39994696 Bda14g00899 Bda-Chr14:7003994 2.21E-17 dispersed
Bda10g01194 Bda-Chr10:45930035 Bda14g00899 Bda-Chr14:7003994 6.23E-50 transposed
Bda10g01114 Bda-Chr10:45137610 Bda14g00899 Bda-Chr14:7003994 0 wgd
Bda14g00899 Bda-Chr14:7003994 Bda07g01511 Bda-Chr7:28103497 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g403 Blo04g00806 . . . . . . . . . Cma10g00269 Cma11g00239 Car10g00252 Car11g00218 . . Cpe04g01432 Bhi02g00041 Tan09g1983 . . . . . . . . . . . . . . . Cone19ag0022 . . . . . . . Bda14g00899 . Bpe15g00559 Bma03g00874 . . Cmo10g00287 Cmo11g00243 . . . . . Cpe18g00728 . . . . . . . . . . . . . . Lsi06g01374 Csa01g00316 . Cme02g01792
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001604 2 5 3 2 2 1 4 1 1 1 1 1 4 2 2 4 1 3 4 1 2 2 3 2 2 2 2 5 4 2 71
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda14g00899 Bda_Chr14 FPKM 11.835347 13.119267 5.970829 7.330803 9.306303 10.666496 10.069623 10.093127 11.40982