Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda14g00900 ATGGGGAGCGATAGCGAGAACGAGAAGTCCATTCAGAAGGAGAGAGAGAGGAAGAAGATGTTGAATCTTGCTCCCATTGCCAAACCACTCGCCGGGAAGAAGCTCTGCAAGCGTACCCTCAAGCTCGTCCGAAGAGCCGCTGAGCACAAATGCTTGAAGCGTGGTGTGAAGGAGGTTGTTAAAAGCATAAGGCGCGGCCAAAAGGGGTTTTGTGTAATAGCTGGTAACATATCGCCTATCGATGTTATCACCCATGTTCCAATCTTGTGTGAAGAGGCCGATATTCCATATGTATATGTTCCTTCGAAGGAAGATCTTGCTACTGCAGGGGTAACCAAAAGGCCAACTTGTTGTGTTCTGGTTCAAACTAAGCCGAACAAGGGGGAGCTAGCTCAGGAGGATCAAGACAAGCTCAAGGCCGAGTATGCACAGGTTGTAGCCGAAGTGTCTGAGCTAACAACTACTCTTTTTTGA 474 48.31 MGSDSENEKSIQKERERKKMLNLAPIAKPLAGKKLCKRTLKLVRRAAEHKCLKRGVKEVVKSIRRGQKGFCVIAGNISPIDVITHVPILCEEADIPYVYVPSKEDLATAGVTKRPTCCVLVQTKPNKGELAQEDQDKLKAEYAQVVAEVSELTTTLF 157
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 7008825 7010285 - Bda027680.1 Bda14g00900 20951

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda14g00900 157 PRINTS Ribosomal protein L7A/RS6 family signature 71 84 IPR018492 -
Bda14g00900 157 PRINTS Ribosomal protein L7A/RS6 family signature 97 111 IPR018492 -
Bda14g00900 157 PRINTS Ribosomal protein L7A/RS6 family signature 52 66 IPR018492 -
Bda14g00900 157 PRINTS Ribosomal protein L7A/RS6 family signature 87 97 IPR018492 -
Bda14g00900 157 PANTHER - 2 155 - -
Bda14g00900 157 SUPERFAMILY L30e-like 18 131 IPR029064 -
Bda14g00900 157 Pfam Ribosomal protein L7Ae/L30e/S12e/Gadd45 family 40 125 IPR004038 -
Bda14g00900 157 PANTHER RIBOSOMAL PROTEIN L7AE FAMILY MEMBER 2 155 - -
Bda14g00900 157 Gene3D - 17 153 IPR029064 -
Bda14g00900 157 PRINTS High mobility group-like nuclear protein signature 55 65 IPR002415 GO:0003723|GO:0005730
Bda14g00900 157 PRINTS High mobility group-like nuclear protein signature 38 53 IPR002415 GO:0003723|GO:0005730
Bda14g00900 157 PRINTS High mobility group-like nuclear protein signature 99 111 IPR002415 GO:0003723|GO:0005730
Bda14g00900 157 PRINTS High mobility group-like nuclear protein signature 25 38 IPR002415 GO:0003723|GO:0005730
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda14g00900 K11129 NHP2, NOLA2; H/ACA ribonucleoprotein complex subunit 2 - gmx:100305515 274.633
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda11g00140 Bda-Chr11:1865872 Bda14g00900 Bda-Chr14:7008825 4.67E-22 dispersed
Bda14g00900 Bda-Chr14:7008825 Bda01g01061 Bda-Chr1:44858312 6.69E-06 dispersed
Bda14g00900 Bda-Chr14:7008825 Bda09g01046 Bda-Chr9:40646246 1.61E-15 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g402 Blo04g00807 . . . . . . . . Cmo18g00014 . . . . . . . . . . . . . . . . . . . . . Cone2ag0778 . . Cone19ag0021 Lsi02g00149 Csa01g00634 . . . . . Bda14g00900 . Bpe15g00558 Bma03g00875 . . . . Cma13g01052 Cma18g00013 Car13g00885 . . . . . . . . . . Cla04g01124 Cam04g1178 Cec01g1690 Cco01g1737 Clacu04g1206 Cmu04g1185 Cre01g1483 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010319 1 1 1 1 1 1 1 0 1 1 0 1 1 1 1 2 1 3 1 1 1 1 1 1 1 1 1 2 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda14g00900 Bda_Chr14 FPKM 7.580065 6.92661 6.940369 7.979452 9.015823 8.642709 8.388899 13.693291 15.390985