Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda14g00903 ATGGCGATGAAGATGCATATCCGAGCTTCGGCCACACCTAACCCTAACCTTCATCCTCCTCCTTCTCTGTCCTCCATTGTTAGTGCCAGAGCTTTTTCAAATACCCATTGGAGGCCCGCCTCCGTTGCATTGGCTACTTCAACCTCCATTTCTCTCTTGACCCTTTTCTCTCTCCCTTTTGAAGCTAGGGCTCTTAATAAAGAACAGATCGTCAATTCTATTACTGAAGTGGAGAAGACGATTGATGCTGCTCAGGAAGTGGGGTCAAGTATCTTGGATTCCACACAGCGTATCGTTGAATCTGTGGGAAGTGCTCTGAAGCCTGGGGTAGACACGGCGCTTCCGATTGTACAGCGTGCTGGAGAACAGGCCTTAAAGGTTGCTTCTCCGGCCATTTCCGAGGCTTCCAAGAAAGCTCAAGAGGCAATTCAGAGCACTGGCATTGACACAGAGCCTGTGCTCAATGCTGCTAAGTCGGTTCAGCCCTCCATCCCTTTCTATGAAGACATAGATCTCTGTATTAGCTTAGCCAATTGTTGTTTATGCTGTGAACTTACTCCTGCTCAAGCCCTTGATCTAGTATCGACTAAAAACCACCTTTTGATTGACATAAGATCGGAGAAAGATAAGGAGAAAGCCGGGATTCCTCGTCTCCCCTCAAGGGTGAAGAACAGTATGATTGCAATTCCTTTGGAAGAACTATCGAGCAAGTTAAAAGGAGCCGTCCGCGATGCGAAGAAAGTAGAAGCCGAAATCGGGGCTATAAAGATTTCATATCTCAAGAAAATCAATAAAGGCTCCGAAATCATCATCCTCGACTCGTACTCAGACTTGGCTAAAACAGTGGCAAAAGCACTCACAAGCTTTGGGTTTAAGAATTCTTGGATTGTGGCTGATGGATTTTCGGGGAGGAAGGGTTGGCTGCAAAGTCGTTTAGGAACCGACACATTTAACTTCTCTGTTGCGGAGCTCATCTCACCATCACAAGTCGTTCCCGCATCGACCAGACAATTTGGCACGAGAAGCTTAACCGCTCGATCTGGGCAAAGGTTACTGCCCGGGGGTGATTAA 1071 47.25 MAMKMHIRASATPNPNLHPPPSLSSIVSARAFSNTHWRPASVALATSTSISLLTLFSLPFEARALNKEQIVNSITEVEKTIDAAQEVGSSILDSTQRIVESVGSALKPGVDTALPIVQRAGEQALKVASPAISEASKKAQEAIQSTGIDTEPVLNAAKSVQPSIPFYEDIDLCISLANCCLCCELTPAQALDLVSTKNHLLIDIRSEKDKEKAGIPRLPSRVKNSMIAIPLEELSSKLKGAVRDAKKVEAEIGAIKISYLKKINKGSEIIILDSYSDLAKTVAKALTSFGFKNSWIVADGFSGRKGWLQSRLGTDTFNFSVAELISPSQVVPASTRQFGTRSLTARSGQRLLPGGD 356
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 7026005 7028148 - Bda027683.1 Bda14g00903 20954

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda14g00903 356 Gene3D - 182 321 IPR036873 -
Bda14g00903 356 PANTHER RHODANESE/CELL CYCLE CONTROL PHOSPHATASE SUPERFAMILY PROTEIN 5 160 IPR044690 GO:0009704|GO:0071277|GO:0090333
Bda14g00903 356 MobiDBLite consensus disorder prediction 1 20 - -
Bda14g00903 356 Pfam Rhodanese-like domain 187 303 IPR001763 -
Bda14g00903 356 SUPERFAMILY Rhodanese/Cell cycle control phosphatase 184 303 IPR036873 -
Bda14g00903 356 PANTHER RHODANESE/CELL CYCLE CONTROL PHOSPHATASE SUPERFAMILY PROTEIN 183 354 IPR044690 GO:0009704|GO:0071277|GO:0090333
Bda14g00903 356 Coils Coil 231 251 - -
Bda14g00903 356 PANTHER CALCIUM SENSING RECEPTOR, CHLOROPLASTIC 5 160 - -
Bda14g00903 356 SMART rhod_4 185 313 IPR001763 -
Bda14g00903 356 ProSiteProfiles Rhodanese domain profile. 195 316 IPR001763 -
Bda14g00903 356 PANTHER CALCIUM SENSING RECEPTOR, CHLOROPLASTIC 183 354 - -
Bda14g00903 356 CDD RHOD 189 303 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda14g00903 - - - qsu:112038066 407.142
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda11g01750 Bda-Chr11:52254042 Bda14g00903 Bda-Chr14:7026005 1.43E-43 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g389 . . . . . . . . Cmo13g01091 . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi02g00153 Csa01g00637 Chy12g01465 Cme12g01908 . . . Bda14g00903 . Bpe15g00555 . . Sed01g2262 . . Cma13g01050 . Car13g00883 . Cpe09g01146 . Bhi08g01041 Tan05g2307 Cmetu03g1392 Lac10g0201 Hepe07g2429 . . Cla04g01122 Cam04g1175 Cec01g1687 Cco01g1735 Clacu04g1203 Cmu04g1182 Cre01g1480 . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bda14g00502 . 71 377 Sulfurtransferasese/Rhodanese AT1G79230 78.5 4.1e-147 517.7
Bda14g00502 . 59 323 Sulfurtransferasese/Rhodanese AT1G16460 73.6 6.4e-114 407.1
Bda14g00903 . 38 274 Sulfurtransferasese/Rhodanese AT5G23060 50.2 6.2e-60 228.0
Bda11g00218 . 1 426 Sulfurtransferasese/Rhodanese AT4G01050 51.8 1.9e-119 426.4
Bda01g01650 . 1 214 Sulfurtransferasese/Rhodanese AT1G09280 57.4 8.6e-63 238.4
Bda01g01648 . 1 214 Sulfurtransferasese/Rhodanese AT1G09280 56.5 9.5e-62 235.0
Bda15g00120 . 91 459 Sulfurtransferasese/Rhodanese AT2G40760 72.7 1.1e-153 540.0
Bda03g01402 . 40 221 Sulfurtransferasese/Rhodanese AT3G08920 61.5 1.3e-64 243.0
Bda06g00622 . 1 305 Sulfurtransferasese/Rhodanese AT4G24750 59.3 3.4e-100 361.7
Bda09g01328 . 17 296 Sulfurtransferasese/Rhodanese AT5G19370 57.4 5.9e-84 307.8
Bda12g00925 . 117 480 Sulfurtransferasese/Rhodanese AT5G55130 70.3 1.7e-149 525.8
Bda06g00795 . 1 163 Sulfurtransferasese/Rhodanese AT4G27700 81.0 1.4e-74 276.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010320 1 1 1 0 1 1 1 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 1 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda14g00903 Bda_Chr14 FPKM 1.917246 2.310714 2.456378 2.691428 6.265874 6.087057 6.564444 1.478597 1.840595