Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda14g00969 ATGTCTTATCCTAACCCCAATAACAGAAACTCTCTATATCCTCAAGTTATTCAAACAAATCCCGATGCCCCTCCACCTCGCATCTCTCATTCCGATCTCAATCCGCCTTCTTCTTCTTCTTCTAACCTTTATCCCACCATCGACATGAAAGATCTCGTTGAGAATCTGTTCCCGGACCGGGATGATTGTCACAACCCTGATCTCATTCCTCCTTCTGCTCCTCCTGTAGCGACGGAGGAGGTTCTTTTCAAAATCTCTGGGGCCATTCTTAATCTCATTGACAGGAATTATAGTGTCGAGCTCGCTTGTGGTGATTTTTCCATTGTCCTTCTACGACAGGGCGAAAATGTGATTGCAGTGCTCGCTCGGGTCGCTGATGAAATCCAATGGCCTTTGACAAAGGATGAAGTGGCCGTTAAACTCGACGAATCACATTACTTCTTCTCTCTTCGCGCTCCGAAAAAGGAAGATTCCAGTTCCGATTCCGATTCGAGCGACGAGGAGGGGGGAAGAAGGAACGACCAGGGCTCTGAAAACATGTTGAATTACGGGCTAACGATCGCATCAAAAGGGAAAGAGAAATCATTGAAGGAATTAGATGGAATTTTGAGTCAATATAGTAGCTTCGCGGTACAGAAGGTGTCCGATAAAGCGAAGAAGGGAGAAGCACTTGATGTGTCTCTGGCAAAGGAGATGTCTCCGGCGGATCTGAAATCGGAGAAGAAGAAGGAACTAATGGAGGGAAAATGCGCGGCGTACTGGACGACATTGGCTCCAAATGTGGAGGATTACAGTGGGACAGCTGCAAAGTTGATCGCCGGTGGTACAGGTCAAGTGATTAAAGGGATTCTCTGGTGTGGCGACGTGACTGTGGAGAGGTTGAAATGGGGTAATGAGGTAATGAAGAAGAGGATGGGCCCTAAATCTGAAGTCGAAATCGACCCTGAAACCTTGAAGAGAATCAAAAGGGTTAAAAGGGTAACAAAAATGACAGAGAAAGTAGCGAATGGAGTGCTGTCTGGAGTTATCAAAGTTTCTGGATTTTTCACAAGCTCAGTGGCGAATTCCAAAGCAGGCAAGAAATTCTTCGGCCTCCTCCCTGGAGAAATTGTGCTTGCTTCTCTGGATGGATTTAGTAAAGTTTGTGATGCTGTTGAAGTGGCCGGAAAAAATGTCATGTCTGCATCCTCAACTGTAACCACTGAGCTCGTCTCCCACAGGTATGGGGAGAAAGCTAGCCACGCAACAAATGAAGGTCTCGACGCAGCAGGTCACGCTATAGGGACGGCATGGGCTGCTTTCAAGATCCGAAAGGCCCTTGATCCCAAAAGCGTCGTCAAGCCTTCTACCCTTGCCAAATCTACCATCAAAGCAGGAGCAGCTGATTTGAAAGCTAAGAGATCCAACTGCATATTAAAAGCCTCCACCCAATTTCCTATCATACAGGCTCTCTGTGACACATATAAGCACATTTACAACAAAGCCTTTTATGCTAATACATGTTTTGTGATATTGGTCATGTTGGCAATTTTAATTGGACTTTTAACAATATTGACGTGGCATTTTACAAAGATCTACACTGCCGATTCCCTGAACAGCTTAGCATATGGTCTGCGACATGAGCTTCTACAACGTCCAATTCTAAAAATGTCGAGCATCTTGAATGCCACTTCTGAAATAACAACAGCCCAGGTTAAGCTCGCGGAGTACGTCATGAGAAAGTACGATAAGCCTGCAACTCAAGCACAGGAAGTTGAGTTGTATGAATCAATGAAGGCTGTAACTTGGGCTCTATTTGCAAGTGAAAAAGCTCTGGACGCCATCACTATCAACTACAGAAACGGTTTTGTACAGGCATTTCATAGAGATCATAGTAGCAATAATACATTCTATATTTACTCTGATCTCACCAATTATTCTATCAGTTCTACTGAGTCTTATAACCTGAGTAGACTGCCATTAGATCAAGGCTGGTCTGACCATCCAATTCACGGCAACCTTTCTGCAATTTGGTATCAGGAACCACTCGATCCTGTCAGTGGTGTAAAGATTGGAAAATCAAGGCCAATCCCTCCTGAGGATTTGATTAATATCGCTGGAATTTCGCAAGTGCCATATGGTGTGGCCTCATGGGATGTGACTGTCAGCAAGTATATGGACTCACCGTTACTTTCTGCTGCATTGCCTGTCTCGGACCCTTCAAATGAAAGTATTATTGCTGTTGTGGGTGTCACCACTGCACTTTCTGGCGTAGGCCAGCTGATGAAAGAGCTTGTTGAATATCATAGCGGGCATATTTATCTGACATCTCAAGAGGGTTACTTGCTAGCTACTTCAACCAATGCTCCACTTTTGACAAAAACTATCAAGGGTCCAAAGCTTACGATGGCAGTAGATTCTGAGGATGACTCGATACGATTAGGCGCTGAGTGGCTGCAGAAAACATACGGCAACAAGTTTCCTCCTAAACACGAGGTTCATGTAGAGAATGTCAAGCTTGGTCACCAGCAATATTACATCGACTCATTTTTCCTCAATTTAAAGAGACTTCCTATTGTTGGGGTTGTCATCATTCCAAGAAAATACATAATGGGGAAGGTTGATGAGAGAGCTTTCAAAACACTGGTTATCCTAATATCTGCATCATTATGTATCTTAGTCATTGGATGTGTCTGCATTTTCATTTTGACTAACGGAGTATCGAAGGAAATGAAACTAAGAGCAGAGTTGATAAGCCACCTGGATGCAAGAAGAAGGGCTGAGGCATCTAACAACTACAAAAGCCAATTTCTAGCAAATATGAGTCATGAGTTACGGACACCGATGGCTGCTGTGATTGGGCTGTTGGACATTCTTATGTGTGATGATTGCATAACAAATGAGCAGTATGCTACAGTTTCCCAGATTCGGAAATGCTCAACAGCTCTACTCCGGCTACTAAACAACATATTGGACTTGAGCAAGGTTGAATCTGGAAAATTAGTGCTGGAAGAAGCTGAGTTTGACCTGGGACGGGAACTTGAAGGTCTTGTCGATATGCTTTCTGTGCAGTGCATTAACCACAACGTGGAGACCGTGTTAGATCTTTCTGATGATATGCCGAGATTAGTTCGGGGAGACTCTGGTAGAGTTGTTCAAATATTTGCAAATCTGATCAGCAATTCTATCAAGTTTACGGCATCTGGTCACATTATTCTTCGCGGGTGGTGTGAGAGCTCAAGTTCTTTAAATGATGATGGGAAGTTTTCTTTTGATCAGAAGAGATCTCGGTTTCCCGGTCGGATGAAACTGAAGCAACAGGGACATCATATGAGAAGCACATACAAGAAGGAGAATAAAATGGCTCTCTGGTTTGAAGTTGATGACACAGGGTGTGGAATTGATCCGAGCAAATGGGAGTCTGTCTTTGAAAGCTTCGAGCAAGCTGACCCCTCAACGACCCGAACGCATGGAGGCACGGGTCTCGGACTATGCATTGTCCGAACTTTGGTGAAGCAGATGGGGGGAGAAATCAAGGTTGTGAAGAAGGATGGTCTAGGAACTCTAATGCAATTCTGCTTGGTCCTAAGCACACCAAAGGATGCCTTGGAGCAACGCTGTCAAATAGATTTTTCAGAGCACAATATGGTGTTATTGCTCGCCGTACGAGGGAGCATGAGTAGATTGATCATGTCCGAATGGCTTCATAAAATTGGAGTGCTAACTGTTCAAGCGTCCGAGTGGAATGGTTTAACAGTAATTCTTCAAGAACTATTCCAAGGAAGAAATCATGGATCTCTGACTGGATCTTTCGGAACTGAATCATTCGATATTCAAGACGTGAGAAGTCGCATCTTCATCACTTTTGTTGACGTAGGGCTACTTGACTTGAGCACGGATATATGGAAGGAACAACTTAACTTCCTGGATAAATACTCAGGAAAGACTAAGTTTTCGTGGATGTTAAATCACGATACCTCCAATGCGGTAAAGATGGAGCTTCGGAGGAAAGGGCACTTGTTAATGATCAACAGGCCTCTGTACAAGGCAAAAATGATTCAGATTCTGGAAGCTGTGATGAAGGAAAAAAATGATGAACAACCAAAAAGAAGTTTGAATTCTTTGCAGTCTTTATCGAAGGAAGGCAACTTCTACGAATGCCTTGAAATCGATTCCACTCATTTTGATAACTGCAGCTCGGACGATTCTGATGTACCGAAATCGGGCAGTTCGAACTCCAAATGTTCATTTCCAGTTGGAGAAAAACAAAGAGATGGGATTACAAAGCCATGCAGGTCAACTTATCAGAAAGGCAACAGTTTTCTAGTAGAATCAACTACTGTATATTCAAAGGAAAGTAGGCCCATTACATCAGCAAATTCTGAATGTCAAGAACAGAATTTAAAGAAAGAAGATGGCAATTTGAATTCTCGATGCGAGCCCTGTCAGAAATCTCTCGAAGGAGTACGAATTCTACTTGCAGAAGATACACCAGTTCTCCAAAGAGTGACGACTAAAATGCTAGAAAAAATGGGAGCTGAAGTTGTTGCGGTGGGAGATGGAGTGCAGGCAGTAGCCGCAATATCATCGATGGTAGAAGTCGAAGAAAATGGCAGGGAATCTTCGACCAAAGTTGGGGATGCGGATGCCACCCTATATGACTTGATCTTAATGGACTGTCAAGTAAGAACCCCAAACAATCTCCTTTTATTTACTATTCGGATTTCTTACAAAGTTGGGTTCTTGTGCTTGGAATTTCAGATGCCGAAAATGGATGGATACGAAGCGACGAGAGTAATCAGGAAATCGGAAGCCAGAAGCGGGTTTCACATTCCAATAGTTGCTTTGACTGCTCATGCCATGTCGTCAGACGAAGCAAAGTGCTTGGAAGTAGGGATGGATGCTTATTTGACAAAGCCAATCAACTATAAGTTGATGGTCTCCACCATTCTTTCTCTCACCAAAAGAACACCTTCACTTCCCTCCTCCCAAGGATGA 4977 43.7 MSYPNPNNRNSLYPQVIQTNPDAPPPRISHSDLNPPSSSSSNLYPTIDMKDLVENLFPDRDDCHNPDLIPPSAPPVATEEVLFKISGAILNLIDRNYSVELACGDFSIVLLRQGENVIAVLARVADEIQWPLTKDEVAVKLDESHYFFSLRAPKKEDSSSDSDSSDEEGGRRNDQGSENMLNYGLTIASKGKEKSLKELDGILSQYSSFAVQKVSDKAKKGEALDVSLAKEMSPADLKSEKKKELMEGKCAAYWTTLAPNVEDYSGTAAKLIAGGTGQVIKGILWCGDVTVERLKWGNEVMKKRMGPKSEVEIDPETLKRIKRVKRVTKMTEKVANGVLSGVIKVSGFFTSSVANSKAGKKFFGLLPGEIVLASLDGFSKVCDAVEVAGKNVMSASSTVTTELVSHRYGEKASHATNEGLDAAGHAIGTAWAAFKIRKALDPKSVVKPSTLAKSTIKAGAADLKAKRSNCILKASTQFPIIQALCDTYKHIYNKAFYANTCFVILVMLAILIGLLTILTWHFTKIYTADSLNSLAYGLRHELLQRPILKMSSILNATSEITTAQVKLAEYVMRKYDKPATQAQEVELYESMKAVTWALFASEKALDAITINYRNGFVQAFHRDHSSNNTFYIYSDLTNYSISSTESYNLSRLPLDQGWSDHPIHGNLSAIWYQEPLDPVSGVKIGKSRPIPPEDLINIAGISQVPYGVASWDVTVSKYMDSPLLSAALPVSDPSNESIIAVVGVTTALSGVGQLMKELVEYHSGHIYLTSQEGYLLATSTNAPLLTKTIKGPKLTMAVDSEDDSIRLGAEWLQKTYGNKFPPKHEVHVENVKLGHQQYYIDSFFLNLKRLPIVGVVIIPRKYIMGKVDERAFKTLVILISASLCILVIGCVCIFILTNGVSKEMKLRAELISHLDARRRAEASNNYKSQFLANMSHELRTPMAAVIGLLDILMCDDCITNEQYATVSQIRKCSTALLRLLNNILDLSKVESGKLVLEEAEFDLGRELEGLVDMLSVQCINHNVETVLDLSDDMPRLVRGDSGRVVQIFANLISNSIKFTASGHIILRGWCESSSSLNDDGKFSFDQKRSRFPGRMKLKQQGHHMRSTYKKENKMALWFEVDDTGCGIDPSKWESVFESFEQADPSTTRTHGGTGLGLCIVRTLVKQMGGEIKVVKKDGLGTLMQFCLVLSTPKDALEQRCQIDFSEHNMVLLLAVRGSMSRLIMSEWLHKIGVLTVQASEWNGLTVILQELFQGRNHGSLTGSFGTESFDIQDVRSRIFITFVDVGLLDLSTDIWKEQLNFLDKYSGKTKFSWMLNHDTSNAVKMELRRKGHLLMINRPLYKAKMIQILEAVMKEKNDEQPKRSLNSLQSLSKEGNFYECLEIDSTHFDNCSSDDSDVPKSGSSNSKCSFPVGEKQRDGITKPCRSTYQKGNSFLVESTTVYSKESRPITSANSECQEQNLKKEDGNLNSRCEPCQKSLEGVRILLAEDTPVLQRVTTKMLEKMGAEVVAVGDGVQAVAAISSMVEVEENGRESSTKVGDADATLYDLILMDCQVRTPNNLLLFTIRISYKVGFLCLEFQMPKMDGYEATRVIRKSEARSGFHIPIVALTAHAMSSDEAKCLEVGMDAYLTKPINYKLMVSTILSLTKRTPSLPSSQG 1658
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 7798251 7807089 - Bda027760.1 Bda14g00969 21020

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda14g00969 1658 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1039 1190 IPR003594 -
Bda14g00969 1658 PANTHER OSMOSENSOR HISTIDINE KINASE 1575 1648 - -
Bda14g00969 1658 PANTHER OSMOSENSOR HISTIDINE KINASE 502 1555 - -
Bda14g00969 1658 ProSiteProfiles Response regulatory domain profile. 1483 1647 IPR001789 GO:0000160
Bda14g00969 1658 Gene3D - 994 1194 IPR036890 -
Bda14g00969 1658 SMART REC_2 1482 1643 IPR001789 GO:0000160
Bda14g00969 1658 PRINTS Bacterial sensor protein C-terminal signature 1151 1169 IPR004358 GO:0016310|GO:0016772
Bda14g00969 1658 PRINTS Bacterial sensor protein C-terminal signature 1134 1144 IPR004358 GO:0016310|GO:0016772
Bda14g00969 1658 PRINTS Bacterial sensor protein C-terminal signature 1116 1130 IPR004358 GO:0016310|GO:0016772
Bda14g00969 1658 SMART HisKA_10 926 992 IPR003661 GO:0000155|GO:0007165
Bda14g00969 1658 MobiDBLite consensus disorder prediction 152 174 - -
Bda14g00969 1658 Pfam His Kinase A (phospho-acceptor) domain 927 992 IPR003661 GO:0000155|GO:0007165
Bda14g00969 1658 ProSiteProfiles Histidine kinase domain profile. 933 1191 IPR005467 -
Bda14g00969 1658 MobiDBLite consensus disorder prediction 1392 1414 - -
Bda14g00969 1658 Gene3D - 914 993 - -
Bda14g00969 1658 PANTHER TWO-COMPONENT HISTIDINE KINASE 1575 1648 - -
Bda14g00969 1658 PANTHER TWO-COMPONENT HISTIDINE KINASE 502 1555 - -
Bda14g00969 1658 SUPERFAMILY CheY-like 1480 1650 IPR011006 -
Bda14g00969 1658 CDD HisKA 927 988 IPR003661 GO:0000155|GO:0007165
Bda14g00969 1658 MobiDBLite consensus disorder prediction 1 25 - -
Bda14g00969 1658 MobiDBLite consensus disorder prediction 1395 1411 - -
Bda14g00969 1658 MobiDBLite consensus disorder prediction 152 178 - -
Bda14g00969 1658 Pfam Response regulator receiver domain 1571 1641 IPR001789 GO:0000160
Bda14g00969 1658 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 981 1187 IPR036890 -
Bda14g00969 1658 CDD REC_hyHK_CKI1_RcsC-like 1484 1643 - -
Bda14g00969 1658 Pfam Senescence domain 271 457 IPR009686 -
Bda14g00969 1658 Gene3D - 1462 1649 - -
Bda14g00969 1658 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 914 993 IPR036097 GO:0000155|GO:0007165
Bda14g00969 1658 SMART HKATPase_4 1039 1191 IPR003594 -
Bda14g00969 1658 MobiDBLite consensus disorder prediction 1 44 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda14g00969 - - - cmo:103490686 1625.14
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda04g00685 Bda-Chr4:55591704 Bda14g00969 Bda-Chr14:7798251 5.59E-44 dispersed
Bda04g00686 Bda-Chr4:55608164 Bda14g00969 Bda-Chr14:7798251 5.24E-15 dispersed
Bda13g00598 Bda-Chr13:6969439 Bda14g00969 Bda-Chr14:7798251 2.02E-39 dispersed
Bda02g00415 Bda-Chr2:44761368 Bda14g00969 Bda-Chr14:7798251 7.22E-58 transposed
Bda08g00997 Bda-Chr8:20563441 Bda14g00969 Bda-Chr14:7798251 5.02E-14 transposed
Bda11g01830 Bda-Chr11:53535758 Bda14g00969 Bda-Chr14:7798251 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bda11g01830 . 533 1712 Histidine Kinase Gene Family AT2G17820 64.8 0.0e+00 1443.7
Bda14g00969 . 504 1648 Histidine Kinase Gene Family AT2G17820 64.8 0.0e+00 1357.0
Bda13g00598 . 305 1278 Histidine Kinase Gene Family AT2G01830 51.7 1.5e-270 929.5
Bda06g00425 . 197 1076 Histidine Kinase Gene Family AT2G01830 53.3 6.4e-250 860.9
Bda01g00649 . 1 1022 Histidine Kinase Gene Family AT5G10720 54.8 3.5e-284 974.5
Bda01g01665 . 2 1120 Histidine Kinase Gene Family AT1G09570 76.8 0.0e+00 1753.0
Bda06g00414 . 12 1121 Histidine Kinase Gene Family AT1G09570 55.2 0.0e+00 1250.7
Bda11g00500 CCT 29 1120 Histidine Kinase Gene Family AT1G09570 53.0 0.0e+00 1164.1
Bda01g00824 . 36 875 Histidine Kinase Gene Family AT1G09570 54.3 2.6e-265 912.1
Bda08g00333 CCT 1 680 Histidine Kinase Gene Family AT1G09570 52.1 6.9e-202 701.4
Bda11g00500 CCT 30 1061 Histidine Kinase Gene Family AT2G18790 76.6 0.0e+00 1604.0
Bda07g00948 . 15 1045 Histidine Kinase Gene Family AT2G18790 58.5 0.0e+00 1223.8
Bda01g00824 . 15 877 Histidine Kinase Gene Family AT2G18790 66.0 0.0e+00 1152.9
Bda06g00414 . 23 1076 Histidine Kinase Gene Family AT2G18790 53.5 0.0e+00 1114.8
Bda01g01665 . 22 1055 Histidine Kinase Gene Family AT2G18790 51.0 1.0e-306 1049.7
Bda08g00333 CCT 1 616 Histidine Kinase Gene Family AT2G18790 73.8 3.0e-269 925.2
Bda06g00414 . 10 1119 Histidine Kinase Gene Family AT5G35840 62.6 0.0e+00 1400.6
Bda11g00500 CCT 21 1122 Histidine Kinase Gene Family AT5G35840 51.5 0.0e+00 1123.6
Bda01g01665 . 10 1115 Histidine Kinase Gene Family AT5G35840 50.5 0.0e+00 1103.6
Bda01g00824 . 40 871 Histidine Kinase Gene Family AT5G35840 52.1 1.1e-255 880.2
Bda11g00500 CCT 30 1122 Histidine Kinase Gene Family AT4G16250 74.1 0.0e+00 1639.0
Bda07g00948 . 36 1107 Histidine Kinase Gene Family AT4G16250 57.5 0.0e+00 1250.0
Bda06g00414 . 24 1118 Histidine Kinase Gene Family AT4G16250 52.2 0.0e+00 1135.6
Bda01g00824 . 35 875 Histidine Kinase Gene Family AT4G16250 64.7 0.0e+00 1115.9
Bda08g00333 CCT 1 676 Histidine Kinase Gene Family AT4G16250 71.4 7.2e-287 983.8
Bda07g00948 . 14 1108 Histidine Kinase Gene Family AT4G18130 60.6 0.0e+00 1332.0
Bda11g00500 CCT 38 1116 Histidine Kinase Gene Family AT4G18130 58.4 0.0e+00 1252.7
Bda01g00824 . 14 871 Histidine Kinase Gene Family AT4G18130 68.5 0.0e+00 1168.7
Bda08g00333 CCT 1 677 Histidine Kinase Gene Family AT4G18130 54.3 1.6e-211 733.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005785 2 0 2 1 2 1 2 1 1 1 1 1 2 1 0 2 1 2 2 1 1 1 1 1 1 1 1 2 2 1 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17080 PF06911 Senescence 1.20E-45 No_clan Bda TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda14g00969 Bda_Chr14 FPKM 11.666668 6.620274 13.561019 11.984813 5.40244 3.575615 7.29066 10.691545 13.839038