Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Bda14g00977 | ATGGATTTTATTGCGTATTCGTCTCGATTTTCCTCCTCCTCGTCTTTTTCGTTCGCTAATGTCGTCGAGAGGGTCAAGGACATCTGCTGCCACGCGGTTTCTGCAATTATTGGGAATATTCTCTCGGCGATCTTCACGTTCTCCTTCGCGTTAGTGGGCACCTTGTTAGGAGCCATGACAGGGGCATTGATTGGGCAAGAGACAGAGAGTGGATTTGTGAGAGGCGCCGCCGTCGGGGCGATTTCAGGAGCTGTTTTCTCCATCGAAGTCTTCGAATCATCTCTTATTCTTTGGCAGTCTGATGAATCTGGCATAGGCTGTCTTCTCTACCTGATTGATGTCATTTCAAGCCTCCTAAGCGGAAGACTCGTCCGAGAGCGAATTGGTCCGGCCATATTTAGTGCAGTTCAAAGCCAGATGGGCGTCGGAGAGATGAGCTTCGAAGACTTGCCTAACATCTTTGACACTAGCAGCGCCAAAGGGCTGCCTGGAGACTCAGTTGAGAAGATCCCAAAGATCACAATTTCAATGAACAATGACTTGGATGCCTCTGGAGAGAAAGCTTCTTGCTCAGTTTGCCTTCAGGACTTCCAACTGGGAGAGACAGTGAGAAGTTTACCTCACTGCCATCACATGTTTCACTTACCTTGCATAGATAAATGGCTTCTCAAACATGGCTCTTGCCCTTTATGCAGAAGGGATTTGTAA | 708 | 48.02 | MDFIAYSSRFSSSSSFSFANVVERVKDICCHAVSAIIGNILSAIFTFSFALVGTLLGAMTGALIGQETESGFVRGAAVGAISGAVFSIEVFESSLILWQSDESGIGCLLYLIDVISSLLSGRLVRERIGPAIFSAVQSQMGVGEMSFEDLPNIFDTSSAKGLPGDSVEKIPKITISMNNDLDASGEKASCSVCLQDFQLGETVRSLPHCHHMFHLPCIDKWLLKHGSCPLCRRDL | 235 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 14 | 7903613 | 7904889 | + | Bda027772.1 | Bda14g00977 | 21028 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Bda14g00977 | 235 | SMART | ring_2 | 190 | 231 | IPR001841 | - | |
| Bda14g00977 | 235 | CDD | RING-H2_PA-TM-RING | 190 | 232 | - | - | |
| Bda14g00977 | 235 | PANTHER | NEP1-INTERACTING PROTEIN-LIKE 2 | 8 | 235 | IPR044523 | - | |
| Bda14g00977 | 235 | SUPERFAMILY | RING/U-box | 189 | 235 | - | - | |
| Bda14g00977 | 235 | Pfam | YMGG-like Gly-zipper | 48 | 85 | IPR027367 | - | |
| Bda14g00977 | 235 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 152 | 235 | IPR013083 | - | |
| Bda14g00977 | 235 | ProSiteProfiles | Zinc finger RING-type profile. | 190 | 232 | IPR001841 | - | |
| Bda14g00977 | 235 | PANTHER | NEP1-INTERACTING PROTEIN-LIKE 1 | 8 | 235 | - | - | |
| Bda14g00977 | 235 | Pfam | Ring finger domain | 189 | 232 | IPR001841 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Bda04g00171 | Bda-Chr4:5101650 | Bda14g00977 | Bda-Chr14:7903613 | 1.89E-124 | dispersed | |
| Bda11g01819 | Bda-Chr11:53376368 | Bda14g00977 | Bda-Chr14:7903613 | 1.13E-142 | dispersed | |
| Bda14g00977 | Bda-Chr14:7903613 | Bda01g00419 | Bda-Chr1:30723031 | 1.52E-16 | dispersed | |
| Bda14g00977 | Bda-Chr14:7903613 | Bda11g00985 | Bda-Chr11:9555561 | 3.16E-16 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Bda14g00977 | - | - | csv:101220376 | 402.519 |