Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda14g00989 ATGCGGGCCCTTTGTGACTCCTGCGAAAGTGCACCGGCGATTGTTTTTTGCGCCGCCGACGAAGCTGCCCTTTGCGGCGCCTGTGACGAGAAGGTCCATTTGTGTAATAAGCTTGCTAACCGGCATATAAGGGTAGGACTAGAAAATCCGAGCGATGTTCCTCGTTGTGATATATGCGAAAATACACCCGCTTTCTTCTACTGCGAGGTAGATGGCAGTTCCCTCTGTTTGCAGTGCGATACGATTGTTCACGTTGGAGGTAAAAGAACTCATAAAAGATACCTTCTGCTGAGGCAGAGAGTTGAGTTCCCGGGCGATAAACTTCGTGTTTTTGATGATCCAGCTTGTGCCAAGACGAGACTGTTACTTAATCAACCACTGAAAGTTTCTGAGGGAGAGAGCCGGCCAAGTGATTCTCGATTGTCTGATCCGTGTAATGTTGATGATGGGCTTGTTGAGACGGATGGTACAATGATTGATCTGAATATGAAGCCTCATCGGATTCCTGGACAAGCTTCAAATGATCAGGTGCGAATGGATTGA 543 47.7 MRALCDSCESAPAIVFCAADEAALCGACDEKVHLCNKLANRHIRVGLENPSDVPRCDICENTPAFFYCEVDGSSLCLQCDTIVHVGGKRTHKRYLLLRQRVEFPGDKLRVFDDPACAKTRLLLNQPLKVSEGESRPSDSRLSDPCNVDDGLVETDGTMIDLNMKPHRIPGQASNDQVRMD 180
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 8030086 8032824 + Bda027787.1 Bda14g00989 21040

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda14g00989 180 CDD Bbox1_BBX-like 4 47 - -
Bda14g00989 180 Gene3D Classic Zinc Finger 2 96 - -
Bda14g00989 180 SMART bboxneu5 51 96 IPR000315 GO:0008270
Bda14g00989 180 SMART bboxneu5 1 47 IPR000315 GO:0008270
Bda14g00989 180 MobiDBLite consensus disorder prediction 127 147 - -
Bda14g00989 180 Pfam B-box zinc finger 4 34 IPR000315 GO:0008270
Bda14g00989 180 Pfam B-box zinc finger 52 92 IPR000315 GO:0008270
Bda14g00989 180 PANTHER B-BOX ZINC FINGER PROTEIN 19 1 176 - -
Bda14g00989 180 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Bda14g00989 180 SUPERFAMILY B-box zinc-binding domain 48 88 - -
Bda14g00989 180 ProSiteProfiles Zinc finger B-box type profile. 51 96 IPR000315 GO:0008270
Bda14g00989 180 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 176 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda14g00989 - - - tcc:18610806 251.906
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda08g00955 Bda-Chr8:18590465 Bda14g00989 Bda-Chr14:8030086 1.59E-22 dispersed
Bda10g00172 Bda-Chr10:5344462 Bda14g00989 Bda-Chr14:8030086 1.98E-78 dispersed
Bda14g00574 Bda-Chr14:4384124 Bda14g00989 Bda-Chr14:8030086 2.77E-23 dispersed
Bda01g00506 Bda-Chr1:32057229 Bda14g00989 Bda-Chr14:8030086 1.47E-22 wgd
Bda01g01521 Bda-Chr1:51110063 Bda14g00989 Bda-Chr14:8030086 1.90E-20 wgd
Bda11g01843 Bda-Chr11:53635914 Bda14g00989 Bda-Chr14:8030086 5.96E-95 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bda14g00661 . 1 408 C2C2-CO-like Transcription Factor Family AT3G07650 50.2 1.3e-72 270.4
Bda14g00574 CCT,ECH 1 188 C2C2-CO-like Transcription Factor Family AT1G75540 53.4 6.6e-52 201.4
Bda06g00954 BCT,CCT,ECH 1 197 C2C2-CO-like Transcription Factor Family AT1G75540 54.4 8.7e-52 201.1
Bda08g00955 BCT,CCT,ECH 1 194 C2C2-CO-like Transcription Factor Family AT1G75540 53.4 2.5e-51 199.5
Bda10g00172 CCT,ECH 1 177 C2C2-CO-like Transcription Factor Family AT2G21320 62.1 1.6e-52 202.6
Bda14g00989 . 1 176 C2C2-CO-like Transcription Factor Family AT2G21320 59.1 1.1e-50 196.4
Bda11g01843 CCT,ECH 1 182 C2C2-CO-like Transcription Factor Family AT2G21320 57.7 1.9e-50 195.7
Bda10g00172 CCT,ECH 1 176 C2C2-CO-like Transcription Factor Family AT4G38960 62.9 1.8e-54 209.1
Bda11g01843 CCT,ECH 1 180 C2C2-CO-like Transcription Factor Family AT4G38960 59.4 1.1e-51 199.9
Bda14g00989 . 1 174 C2C2-CO-like Transcription Factor Family AT4G38960 58.6 2.9e-49 191.8
Bda06g00954 BCT,CCT,ECH 1 193 C2C2-CO-like Transcription Factor Family AT4G39070 58.0 2.8e-55 212.2
Bda08g00955 BCT,CCT,ECH 1 189 C2C2-CO-like Transcription Factor Family AT4G39070 56.7 4.7e-55 211.5
Bda14g00574 CCT,ECH 1 181 C2C2-CO-like Transcription Factor Family AT4G39070 54.5 5.7e-53 204.5
Bda08g01236 BCT,CCT,ECH 1 208 C2C2-CO-like Transcription Factor Family AT4G39070 51.9 1.2e-47 186.8
Bda01g00506 CCT,ECH 1 112 C2C2-CO-like Transcription Factor Family AT4G39070 64.3 3.1e-38 155.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004570 3 1 3 2 1 1 2 1 1 0 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 0 1 2 2 2 42
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17083 PF00643 zf-B_box 1.70E-07 No_clan Bda TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda14g00989 Bda_Chr14 FPKM 20.929726 24.833618 14.571472 13.104941 32.860329 31.777372 34.923908 12.083177 12.370568