Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda14g00992 ATGAGAAAGCCGGAGGCTTCCATTTCCACGAAACCTTGTTTCGAAACTCGGTTTCCGGCGAAGGCGAGAAGCAAGCGGACAAGAGCCGGAGGTAGGTTTTGGGTTCTAGGATCCCCTACGTTGACGGAATCTTCGTCAAGCTCAACCACGTCGTCGTCGTCGACTTCATCACCGTCAAGCCCCTTGCTCTTCTACAACACCGCGGTTCCTCTCCTCGACGAGACAGTTTTCCCGTTCGAAAAGCCGGTTGCTAAGAAACCGAAGAACAGACCCCCAGTCAACGGAAATGGCGGAAGTGGGAGCCAAACAACTCGCAGGTGCAGCCATTGCGGCGTTCCGAAAACGCCACAGTGGAGGGCCGGGCCTCTCGGGGCGAAGACCCTCTGCAACGCCTGTGGTGTTCGATACAAGTCGGGTCGACTCCTACCCGAATACAGACCGGCTTGTAGCCCCACTTTCTCCACCGAATTGCACTCAAACCATCACCGCAAAGTGCTGGAAATGCGCCGAAATAAAGATTGTCCCCCACAACTGGAGAGGAAAACAGAAAACTGA 555 54.95 MRKPEASISTKPCFETRFPAKARSKRTRAGGRFWVLGSPTLTESSSSSTTSSSSTSSPSSPLLFYNTAVPLLDETVFPFEKPVAKKPKNRPPVNGNGGSGSQTTRRCSHCGVPKTPQWRAGPLGAKTLCNACGVRYKSGRLLPEYRPACSPTFSTELHSNHHRKVLEMRRNKDCPPQLERKTEN 184
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 8132974 8133528 - Bda027793.1 Bda14g00992 21043

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda14g00992 184 ProSiteProfiles GATA-type zinc finger domain profile. 101 137 IPR000679 GO:0006355|GO:0043565
Bda14g00992 184 MobiDBLite consensus disorder prediction 38 60 - -
Bda14g00992 184 CDD ZnF_GATA 106 154 IPR000679 GO:0006355|GO:0043565
Bda14g00992 184 MobiDBLite consensus disorder prediction 1 60 - -
Bda14g00992 184 MobiDBLite consensus disorder prediction 82 108 - -
Bda14g00992 184 ProSitePatterns GATA-type zinc finger domain. 107 132 IPR000679 GO:0006355|GO:0043565
Bda14g00992 184 Gene3D - 100 151 IPR013088 GO:0006355|GO:0008270
Bda14g00992 184 Pfam GATA zinc finger 107 141 IPR000679 GO:0006355|GO:0043565
Bda14g00992 184 PANTHER GATA TRANSCRIPTION FACTOR 8 173 - -
Bda14g00992 184 MobiDBLite consensus disorder prediction 94 108 - -
Bda14g00992 184 PANTHER GATA TRANSCRIPTION FACTOR 8 173 - -
Bda14g00992 184 SMART GATA_3 101 155 IPR000679 GO:0006355|GO:0043565
Bda14g00992 184 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 102 163 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda14g00992 - - - zju:107410110 219.164
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda04g00030 Bda-Chr4:483324 Bda14g00992 Bda-Chr14:8132974 9.66E-55 dispersed
Bda14g00992 Bda-Chr14:8132974 Bda15g00165 Bda-Chr15:4214643 3.08E-33 dispersed
Bda11g01846 Bda-Chr11:53656847 Bda14g00992 Bda-Chr14:8132974 8.80E-70 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bda03g00433 . 75 291 C2C2-Gata Transcription Factor Family AT5G25830 51.4 4.8e-58 221.9
Bda09g00660 . 76 275 C2C2-Gata Transcription Factor Family AT5G25830 51.1 4.0e-49 192.2
Bda09g00212 . 74 275 C2C2-Gata Transcription Factor Family AT5G25830 51.1 9.0e-49 191.0
Bda03g01053 BCT 1 240 C2C2-Gata Transcription Factor Family AT3G60530 51.4 3.7e-52 201.8
Bda04g00030 CCT,ECH 38 205 C2C2-Gata Transcription Factor Family AT5G66320 58.2 5.8e-43 171.8
Bda14g00992 . 2 173 C2C2-Gata Transcription Factor Family AT5G66320 55.7 4.1e-41 165.6
Bda14g00992 . 8 173 C2C2-Gata Transcription Factor Family AT3G51080 60.5 2.9e-41 166.0
Bda04g00030 CCT,ECH 38 185 C2C2-Gata Transcription Factor Family AT3G51080 63.9 7.2e-40 161.4
Bda06g00001 . 1 328 C2C2-Gata Transcription Factor Family AT4G17570 57.2 3.9e-91 332.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008902 3 0 2 1 2 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 2 1 2 34
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17085 PF00320 GATA 2.90E-16 CL0167 Bda TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda14g00992 Bda_Chr14 FPKM 13.884444 9.012049 15.213739 16.70414 11.09504 5.606648 7.440588 14.196766 16.403561