Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda14g00999 ATGGATGTCGAGACAATTTTCCACATGAAAGGCGGAGTTGGAGAAACCAGCTACGCCAGAAACTCCTCCCTTCAGAGGAAGGCTTCAGATGTGGCAAAGCATATAGCTTTGGAGACAGTGCGAGACGTTTATTTCTCCCAGAACCCAGCAAGCTTCGGCATAGCTGATTTAGGGTGTTCTTCTGGACCGAACACCTTGTCCATAATCAAAGACATAATTGAGGTTGTTTGGAGAACAAGTTCAAATTTTTGTCAACAAACTCCAGAGTTTCGAGTGTACCTCAATGATCTTCCCACCAACGACTTCAACTCCATCTTCAAGGCTTTGCCTGATTTCTGTAGGGAGCTTCAAAGGGAGAAGAATAATGGGCGTCTTCCAATTTTCATTGGAGGCTATCCTGGCTCCTTCTATGGCAGACTTTTTCCAAACAATTGCTTGCACTTTGTCTATTCATCCTACAGTTTGCACTGGCTCTCAAGGGTAACGCTCTTTCTTTCTCCCTTGATCATATATACAATTATACTCCCTGAATTCAACTTCCATGATTTTCAGATTCCCGTGGGTCTTTATAATCAGGAACTAGGCGAGAGTATGAACAAAGGATCGGTGTACATTTCTGAATCCAGTCCTCCACGGGTTTCTCAAGCCTACCTGAAGCAATTTAAGGAGGATTTCTCACTTTTTCTCGGGTCAAGGGCGGAGGAACTCATAGTCGGCGGACGAATGGTGTTAATCTTGCTGGGAAGAAGAGACTCAGCTCATATCGACAGAGGCAATTCTGTCTTCTGGCGAGTTCTCACCCGCAGCTTTGAAACCTTAGTCTCAAAGGGAGAAATCGAGAGGGAGAAGCTGGATTCATACGACGTCCACTTTTACGCTCCATGCAGAGAAGAAATAGAAGACGTAGTGAGAAAAGAAGGTTCCTTCGGCTTAGATCTGCTGGAAATGTGTGAAATTGAGAGGACCGCCGTGAAGGGTAGGGAGAGCTACGGGACGGCCGTGGCAATGGCTGTGAGGGCCATCCAAGAGTCGATGATAAGCCACCATTTCGGAGAAGAAATTTTAGACAGTCTGTTTGAGACTTACGCAAAGATTTTGGATGAAGAAATGGGCAAAGAAGAAATAAAAGCCATCTCTCTGGTTCTTGTTCTTACAAAGTTGTAA 1164 45.02 MDVETIFHMKGGVGETSYARNSSLQRKASDVAKHIALETVRDVYFSQNPASFGIADLGCSSGPNTLSIIKDIIEVVWRTSSNFCQQTPEFRVYLNDLPTNDFNSIFKALPDFCRELQREKNNGRLPIFIGGYPGSFYGRLFPNNCLHFVYSSYSLHWLSRVTLFLSPLIIYTIILPEFNFHDFQIPVGLYNQELGESMNKGSVYISESSPPRVSQAYLKQFKEDFSLFLGSRAEELIVGGRMVLILLGRRDSAHIDRGNSVFWRVLTRSFETLVSKGEIEREKLDSYDVHFYAPCREEIEDVVRKEGSFGLDLLEMCEIERTAVKGRESYGTAVAMAVRAIQESMISHHFGEEILDSLFETYAKILDEEMGKEEIKAISLVLVLTKL 387
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 8384469 8385836 + Bda027805.1 Bda14g00999 21050

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda14g00999 387 Gene3D Vaccinia Virus protein VP39 21 374 IPR029063 -
Bda14g00999 387 Pfam SAM dependent carboxyl methyltransferase 39 162 IPR005299 GO:0008168
Bda14g00999 387 Pfam SAM dependent carboxyl methyltransferase 184 386 IPR005299 GO:0008168
Bda14g00999 387 Gene3D - 6 373 IPR042086 -
Bda14g00999 387 PANTHER S-ADENOSYL-L-METHIONINE:CARBOXYL METHYLTRANSFERASE FAMILY PROTEIN 184 385 IPR005299 GO:0008168
Bda14g00999 387 PANTHER S-ADENOSYL-L-METHIONINE:CARBOXYL METHYLTRANSFERASE FAMILY PROTEIN 2 162 IPR005299 GO:0008168
Bda14g00999 387 PANTHER OS01G0701700 PROTEIN 184 385 - -
Bda14g00999 387 PANTHER OS01G0701700 PROTEIN 2 162 - -
Bda14g00999 387 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 1 386 IPR029063 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda14g00999 - - - qsu:111988178 495.738
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda14g00999 Bda15g00505 CCT
Bda14g00999 Bda15g00505 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g00269 Bda-Chr3:2361007 Bda14g00999 Bda-Chr14:8384469 7.98E-95 dispersed
Bda14g00966 Bda-Chr14:7787993 Bda14g00999 Bda-Chr14:8384469 2.93E-80 dispersed
Bda15g00505 Bda-Chr15:8137806 Bda14g00999 Bda-Chr14:8384469 1.71E-38 transposed
Bda01g00519 Bda-Chr1:32153947 Bda14g00999 Bda-Chr14:8384469 1.32E-101 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g247 . . . Bda15g00505 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda14g00999 . . . Bma08g00047 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006385 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 4 1 1 1 1 1 1 1 1 1 3 2 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda14g00999 Bda_Chr14 FPKM 0.144781 0.0 30.668043 32.773434 0.0 0.0 0.0 1.382016 1.377349