Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda14g01007 ATGGAAGTGGGTTATAATTCACAAAATAGGGAGTCCTCGTCCAAGCTGACTTCTACAGCCTTTGCTCAAACAGTTGAAGAAAATACAAGCGATGAAACAATTCAACATGGAGAGACAGCTTCCAATCCTCCTCAAACCCTAGACCAGAATTACCTCACTTATCATCTTCATCACCACCATCATTTTCCTCACAGCCGACAATTGAATCCTTCTCCAGAAATTTCCGGCAAATACAGCAAAGATCCACACCCCAACCGGCCAGATCTGGGGCCAGCTCCTACTACTCCCCTGCCCGGAAGATTGAACCCGAAAACTCCATTGCAACCTGGAGCTTCCACCAGTGTAACTATTTCCTCTCCAGTTCGATATCGAGAATGTTTAAAGAACCACGCGGCGAGTATGGGCGGGTACGTTCTCGATGGATGCGGAGAATTCATGCCAAACGGAGAAAAAAACAGTAGAGAAGGTTTGAAATGTGCGGCCTGCGATTGCCATCGTAACTTTCACCGGAAAGAGACCGACGGCGAGCAGCCAGTTCCGTCTTCGGCGAATTGTTACCACCCCTACAGCTCGAACAACACCACCACACGAAGAAGCGATCAAAGAATGGTTCCGACACCTTCCCATCTCCACCACCAGGGATCACTCTCTCTCGGGCCACCGCCGCCGATGATGATGGCCTTTGGAAGTTCCAGTGGAGCTGCAGCGGAGTCTTCAAGCGAAGATCTAGCTATGGGACATCAACCACAATCATCAAAAAAGCGGTTTCGGACAAAATTCACAAATGAACAGAAAGATAGGATGATGGAGTTCGCTGAAAAACTGGGATGGAAGATTCAGAAGCATGATGAAGAAGAGATGCAGCAGTTCTGTACCGAAGCGGGCGTAAAGAGGCAGGTTTTCAAGGTATGGATGCATAACAACAAGCCAACCACAAAAAAACATCAAATGTAA 954 47.8 MEVGYNSQNRESSSKLTSTAFAQTVEENTSDETIQHGETASNPPQTLDQNYLTYHLHHHHHFPHSRQLNPSPEISGKYSKDPHPNRPDLGPAPTTPLPGRLNPKTPLQPGASTSVTISSPVRYRECLKNHAASMGGYVLDGCGEFMPNGEKNSREGLKCAACDCHRNFHRKETDGEQPVPSSANCYHPYSSNNTTTRRSDQRMVPTPSHLHHQGSLSLGPPPPMMMAFGSSSGAAAESSSEDLAMGHQPQSSKKRFRTKFTNEQKDRMMEFAEKLGWKIQKHDEEEMQQFCTEAGVKRQVFKVWMHNNKPTTKKHQM 317
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 8472491 8473444 - Bda027816.1 Bda14g01007 21058

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda14g01007 317 MobiDBLite consensus disorder prediction 177 213 - -
Bda14g01007 317 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 45 315 - -
Bda14g01007 317 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 122 172 IPR006456 -
Bda14g01007 317 MobiDBLite consensus disorder prediction 1 52 - -
Bda14g01007 317 MobiDBLite consensus disorder prediction 1 116 - -
Bda14g01007 317 MobiDBLite consensus disorder prediction 86 103 - -
Bda14g01007 317 Gene3D - 237 314 - -
Bda14g01007 317 MobiDBLite consensus disorder prediction 171 221 - -
Bda14g01007 317 Pfam ZF-HD protein dimerisation region 121 173 IPR006456 -
Bda14g01007 317 SUPERFAMILY Homeodomain-like 241 315 IPR009057 -
Bda14g01007 317 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 7 45 315 - -
Bda14g01007 317 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 253 309 IPR006455 -
Bda14g01007 317 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 123 172 IPR006456 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda14g01007 - - - qsu:111998832 285.034
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda11g01565 Bda-Chr11:48719810 Bda14g01007 Bda-Chr14:8472491 4.09E-43 dispersed
Bda01g01497 Bda-Chr1:50842309 Bda14g01007 Bda-Chr14:8472491 6.55E-64 wgd
Bda11g01865 Bda-Chr11:53736302 Bda14g01007 Bda-Chr14:8472491 5.31E-155 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bda04g00124 . 42 233 ZF-HD Transcription Factor Family AT5G65410 54.7 3.1e-50 195.7
Bda04g00110 . 42 233 ZF-HD Transcription Factor Family AT5G65410 54.7 3.1e-50 195.7
Bda11g00787 . 50 245 ZF-HD Transcription Factor Family AT5G65410 55.3 5.4e-47 184.9
Bda11g00787 . 8 241 ZF-HD Transcription Factor Family AT4G24660 54.9 1.9e-58 222.6
Bda04g00124 . 1 229 ZF-HD Transcription Factor Family AT4G24660 52.1 2.0e-55 212.6
Bda04g00110 . 1 229 ZF-HD Transcription Factor Family AT4G24660 52.1 2.0e-55 212.6
Bda01g01497 BCT 81 275 ZF-HD Transcription Factor Family AT4G24660 51.8 3.6e-44 175.3
Bda06g00184 . 1 289 ZF-HD Transcription Factor Family AT1G14440 50.2 5.5e-56 214.9
Bda14g01007 . 112 314 ZF-HD Transcription Factor Family AT1G75240 50.8 1.7e-41 166.8
Bda12g00161 BCT 24 253 ZF-HD Transcription Factor Family AT5G15210 59.5 7.1e-52 201.1
Bda13g01690 . 10 242 ZF-HD Transcription Factor Family AT5G15210 56.1 2.5e-49 192.6
Bda13g01690 . 16 245 ZF-HD Transcription Factor Family AT3G28920 61.8 4.5e-58 221.9
Bda12g00161 BCT 1 278 ZF-HD Transcription Factor Family AT3G28920 54.3 5.0e-57 218.4
Bda12g00161 BCT 20 264 ZF-HD Transcription Factor Family AT5G39760 53.8 1.1e-51 200.7
Bda13g01690 . 24 264 ZF-HD Transcription Factor Family AT5G39760 53.2 1.5e-51 200.3
Bda07g01353 BCT 60 245 ZF-HD Transcription Factor Family AT1G69600 54.3 3.4e-53 205.3
Bda11g00787 . 8 241 ZF-HD Transcription Factor Family AT4G24660 54.9 1.9e-58 222.6
Bda04g00124 . 1 229 ZF-HD Transcription Factor Family AT4G24660 52.1 2.0e-55 212.6
Bda04g00110 . 1 229 ZF-HD Transcription Factor Family AT4G24660 52.1 2.0e-55 212.6
Bda01g01497 BCT 81 275 ZF-HD Transcription Factor Family AT4G24660 51.8 3.6e-44 175.3
Bda12g00161 BCT 20 264 ZF-HD Transcription Factor Family AT5G39760 53.8 1.1e-51 200.7
Bda13g01690 . 24 264 ZF-HD Transcription Factor Family AT5G39760 53.2 1.5e-51 200.3
Bda04g00124 . 42 233 ZF-HD Transcription Factor Family AT5G65410 54.7 3.1e-50 195.7
Bda04g00110 . 42 233 ZF-HD Transcription Factor Family AT5G65410 54.7 3.1e-50 195.7
Bda11g00787 . 50 245 ZF-HD Transcription Factor Family AT5G65410 55.3 5.4e-47 184.9
Bda07g01353 BCT 60 245 ZF-HD Transcription Factor Family AT1G69600 54.3 3.4e-53 205.3
Bda12g00161 BCT 24 253 ZF-HD Transcription Factor Family AT5G15210 59.5 7.1e-52 201.1
Bda13g01690 . 10 242 ZF-HD Transcription Factor Family AT5G15210 56.1 2.5e-49 192.6
Bda06g00184 . 1 289 ZF-HD Transcription Factor Family AT1G14440 50.2 5.5e-56 214.9
Bda14g01007 . 112 314 ZF-HD Transcription Factor Family AT1G75240 50.8 1.7e-41 166.8
Bda13g01690 . 16 245 ZF-HD Transcription Factor Family AT3G28920 61.8 4.5e-58 221.9
Bda12g00161 BCT 1 278 ZF-HD Transcription Factor Family AT3G28920 54.3 5.0e-57 218.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005348 2 2 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 0 40
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17087 PF04770 ZF-HD_dimer 2.80E-29 No_clan Bda TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda14g01007 Bda_Chr14 FPKM 3.069824 0.0 7.194592 6.326518 6.123891 4.321604 9.188557 11.867887 0.0