Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda14g01013 ATGAATGGTGAGAACAAGACAAAAAATCCGTCTTCTGTCGATTCTCCGACATCGGTGCTGGAAGAAGAGGATGTATGCAAGCAAGAAAATGGAGTCCAAGAAGATGGCCAGACACTTCAGGATGCAAAAAGGGGGGATTGCATTCTTATATCAAGAGAAATGGAAGAAGAGGAAGAAACTTTGTTAAAAGCTCGAATAAAGGAAGAAGAGGCAGAGCCGGGAGAGAAGTCTGTCACGTCACCACATCTGGACGAATGTCAATTTACAAAGTTGGATGAGCTCTTGACTCAAACACAGTTATATTCAGAGTTTCTGCTGGAGAAAATGGACGACATTACATTTAATGGAGTGAAAAAGGAAAGCGAACCTGTTGAGAAGAAAAAGGGTCGTGGCTCTAAAAGAAAAGCCACTACAAACTACAATACTAGAAAAGCAAAGAGAGCAGTTGCAGCCATGCTCACTAGATCTCAAGAATGTCAGAAGGATGAAGATACAAATCTTAGTGTAGAAGAACGAGTTGAAAAGGAGCAGCGAGAGCTGGTCCCTTTGCTGACTGGTGGACACTTGAAGTCATATCAACTCAAAGGTGTGAAATGGCTGATCTCATTGTGGCAAAATGGATTGAATGGGATTCTTGCTGATCAAATGGGACTGGGAAAGACAATTCAGACCATTGGTTTCCTTGCACATTTGAAAGGGAAAGGATTGGATGGACCCTACTTAGTGATTGCTCCTCTTTCTACCCTCTCAAATTGGGTTAATGAAATTTCTAGGTTTTCACCTTCTATAAATGCTATTATCTATCATGGTGATAAGAAAAAAAGGCAGGAGATACGGAGAAAGTTCATGCCGAGAACAATTGGCTCAAAATTCCCCATAGTAGTAACTTCTTATGAAGTTGCGATGGGCGATGCAAGAAAAGTTTTGAGACACTATGATTGGAAATATCTTGTTGTGGATGAGGGACATAGGCTGAAAAACTCAAAATGCAAATTGTTGAAAGAGTTGAAATACTTATCTGTTGAGAATAAGTTACTATTAACTGGGACACCACTGCAAAATAATCTGGCAGAGCTTTGGTCATTGTTGAACTTTATTTTGCCTGATGTTTTCTCATCCCATGAAGAATTTGAGTCATGGTTTGATCTCTCTGGAAAGTGCAACGGTGAAGACAGAGAAGAGTTACAAGAGAAGCAAAAGGGTCAGGTAGTCGTTGCAAAATTACATTCAATATTGCGTCCATTTTTACTCCGAAGATTAAAATCTGAGGTGGAAAACATGCTTCCTGGGAAAAAAGAGATCATAATTTATGCCAAATTAACAGAATATCAGAAGAATTTTCAAGATCATTTAATGAATAAAACTTTGGAAGAATATCTCACTGAGAAGTCATATTCTGGTACTACATCAATAAAAAAGGTGAATAATTTAGTTATTCAGCTTCGGAAGAATTGCAACCATCCTGACCTTCTAGAATCTGCTTTGGACTATTCATACAGATATCCTCCAATAGAGCAGATGGTCGAACAATGTGGTAAATTTCATTTGCTGGACAGATTGTTGGCACGGCTATTTGCTCGCAAGCATAAAGTCCTTATCTTCAGCCAATGGACTAAGATTTTGAACATCATGGATTACTATTTTAGTGAAAAAGGATTTGAAGTTTGTAGAATAGATGGCAATGTCAAGCTAGATGAAAGGAGGAGACAAGTATGTATTCAGGAGTTCAATGATGTCAACAGCAATTATAGAATTTTTCTTCTAAGCACTCGAGCAGGGGGACTGGGTATTAATCTTACAGCTGCAGATACTTGTATTATCTACGACAGTGACTGGAATCCTCAAATGGATTTGCAGGCCATGGATAGGTGTCACCGGATTGGTCAAACCAAGCCTGTTCATGTTTATAGGCTTGCAACTGCTCAATCAATAGAGGGCCGCATGCTAAAACGGGCGTTTAGTAAGTTGAAGCTTGAGCACGTGGTAATTGGCAAAGGACAGTTTCATCAAGAACGAACCAAGGCCAGCTCATATGACGGCACTGAGGGAGAAGATCTGCTGGCGCTGCTGAAGGAGGAAGAAAATGATGAAGACAAGATGATACAGACAGACATCAGTGATGATGATTTGGAAAGAATTTTGGATCGGTCAGATCTGGTGGGTGCAAAGAGCAGCGGTTCTATTCCTCTTGAGGGTCCTGGTTGGGAAGTTGTGATGCCTGCGGCTGCTGGGGGAGTG 2238 40.53 MNGENKTKNPSSVDSPTSVLEEEDVCKQENGVQEDGQTLQDAKRGDCILISREMEEEEETLLKARIKEEEAEPGEKSVTSPHLDECQFTKLDELLTQTQLYSEFLLEKMDDITFNGVKKESEPVEKKKGRGSKRKATTNYNTRKAKRAVAAMLTRSQECQKDEDTNLSVEERVEKEQRELVPLLTGGHLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIGFLAHLKGKGLDGPYLVIAPLSTLSNWVNEISRFSPSINAIIYHGDKKKRQEIRRKFMPRTIGSKFPIVVTSYEVAMGDARKVLRHYDWKYLVVDEGHRLKNSKCKLLKELKYLSVENKLLLTGTPLQNNLAELWSLLNFILPDVFSSHEEFESWFDLSGKCNGEDREELQEKQKGQVVVAKLHSILRPFLLRRLKSEVENMLPGKKEIIIYAKLTEYQKNFQDHLMNKTLEEYLTEKSYSGTTSIKKVNNLVIQLRKNCNHPDLLESALDYSYRYPPIEQMVEQCGKFHLLDRLLARLFARKHKVLIFSQWTKILNIMDYYFSEKGFEVCRIDGNVKLDERRRQVCIQEFNDVNSNYRIFLLSTRAGGLGINLTAADTCIIYDSDWNPQMDLQAMDRCHRIGQTKPVHVYRLATAQSIEGRMLKRAFSKLKLEHVVIGKGQFHQERTKASSYDGTEGEDLLALLKEEENDEDKMIQTDISDDDLERILDRSDLVGAKSSGSIPLEGPGWEVVMPAAAGGV 746
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 8517804 8522910 - Bda033956 Bda14g01013 21064

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda14g01013 746 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 516 676 IPR001650 -
Bda14g01013 746 Gene3D - 190 420 IPR038718 -
Bda14g01013 746 Gene3D - 425 725 IPR027417 -
Bda14g01013 746 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 421 715 IPR027417 -
Bda14g01013 746 Coils Coil 52 72 - -
Bda14g01013 746 SMART helicmild6 542 628 IPR001650 -
Bda14g01013 746 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 164 419 IPR027417 -
Bda14g01013 746 Coils Coil 159 179 - -
Bda14g01013 746 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 201 369 IPR014001 -
Bda14g01013 746 MobiDBLite consensus disorder prediction 1 18 - -
Bda14g01013 746 Pfam SNF2-related domain 192 490 IPR000330 GO:0005524|GO:0140658
Bda14g01013 746 MobiDBLite consensus disorder prediction 1 45 - -
Bda14g01013 746 SMART ultradead3 185 380 IPR014001 -
Bda14g01013 746 CDD SF2_C_SNF 502 638 - -
Bda14g01013 746 Pfam Helicase conserved C-terminal domain 516 628 IPR001650 -
Bda14g01013 746 PANTHER SNF2/RAD54 HELICASE FAMILY 4 746 - -
Bda14g01013 746 PANTHER ATP-DEPENDENT DNA HELICASE DDM1-LIKE ISOFORM X1 4 746 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda14g01013 K19001 HELLS, DDM1; ATP-dependent DNA helicase - qsu:111991807 1142.87
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda11g00484 Bda-Chr11:5119330 Bda14g01013 Bda-Chr14:8517804 8.49E-29 dispersed
Bda13g00159 Bda-Chr13:2063395 Bda14g01013 Bda-Chr14:8517804 2.28E-85 dispersed
Bda05g01036 Bda-Chr5:58801336 Bda14g01013 Bda-Chr14:8517804 3.04E-40 transposed
Bda11g01874 Bda-Chr11:53795238 Bda14g01013 Bda-Chr14:8517804 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1332 Blo04g00920 . . . . . Bma09g00432 . . . Cma03g01112 . Car03g01005 . . . Cpe10g00321 . . . . . . . Cla01g01488 Cam01g1555 Cec04g1201 Cco04g1269 Clacu01g1581 Cmu01g1470 Cre04g1151 . . . . Lsi01g01173 . . Cme08g01140 Blo05g00528 . . Bda14g01013 . . . . . Cmo03g01102 . . . . . . . . . . . . . . . . . . . . . . Csa06g02737 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009588 2 0 2 2 2 1 2 1 1 1 1 1 1 1 1 2 1 1 1 1 1 0 1 1 1 0 1 1 1 1 33
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17089 PF00176 SNF2_N 6.50E-66 CL0023 Bda TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda14g01013 Bda_Chr14 FPKM 7.405926 8.168623 8.001148 8.214183 5.829273 6.481165 7.211734 11.053822 11.425938