Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda14g01043 ATGGAGACTCCCCAAGATGCAAATCCGAACTCGAACCTTAACTCAAGCAGCAATCACAATCGTAATCGCGCACAGAATTCATTGCCGTTTTCAAATCCAAGGATGTGGCCGACGATTCATGGGCCACTCGGGTTATCAGAAGAAGATTCGGTTAGCTACGTTCGCAGATTCTATAAGTTTGGATTTGCTATGCTGCCATTGCTCTTGGCCGTCAATTGCTTTTACTTTTGGCCCGTTTTTCGCCACTCCAAGTCCTTCCCTCGTATTCGTCCATATGTTATGGGATCAGCACTTGGATTCTTTGTTTTCACAGCAATTCTTTCTTCCTGGGCACTGACGTTTGCAGTTGGAGGGGAGGATCTCTTTGGACCCGTTTGGGGTAAACTGGTGATGTATAATCTTGCTGACAGATTAGGATTAACGGGTTGGAGTTAG 435 45.98 METPQDANPNSNLNSSSNHNRNRAQNSLPFSNPRMWPTIHGPLGLSEEDSVSYVRRFYKFGFAMLPLLLAVNCFYFWPVFRHSKSFPRIRPYVMGSALGFFVFTAILSSWALTFAVGGEDLFGPVWGKLVMYNLADRLGLTGWS 144
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 8779727 8781723 + Bda027853.2 Bda14g01043 21094

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda14g01043 144 PANTHER GAMMA-SECRETASE SUBUNIT PEN-2 24 144 IPR019379 -
Bda14g01043 144 Pfam Presenilin enhancer-2 subunit of gamma secretase 47 134 IPR019379 -
Bda14g01043 144 MobiDBLite consensus disorder prediction 1 33 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda14g01043 K06170 PSENEN, PEN2; presenilin enhancer 2 - gmx:106798930 204.142
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda11g01385 Bda14g01043 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda11g01385 Bda-Chr11:17240879 Bda14g01043 Bda-Chr14:8779727 3.97E-78 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1305 . Blo16g00543 . . . Bpe13g00040 . . . Cmo20g01069 . . . . . . . . . . . . . . . . . . . . . . . Cone6ag1279 . . . . . . . Bda11g01385 Bda14g01043 . . . Bma06g00493 . . . . Cma20g01061 . . . . . . . . . . . Cla02g00052 Cam02g0053 Cec02g0054 Cco02g0046 Clacu02g0052 Cmu02g0052 . Lsi10g00731 . . Cme11g00054
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013145 2 1 1 1 1 0 2 0 1 1 0 0 2 1 1 2 0 1 1 0 1 1 1 0 1 0 1 1 1 1 26
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda14g01043 Bda_Chr14 FPKM 3.833006 3.38033 3.795391 5.956985 8.617056 6.192076 7.485107 1.066865 0.358061