Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda14g01058 ATGAAGTTTAGCCCGGATGGCCGATATTTAGCCAGTGGAGGTGAAGATGGAGTTGTTCGAATTTGGCGGGTTAAACTCGTTGATTCTTCAAGCTGTTCTTTACTTAACGAAGGCGGCTTCGATGAGACGTTGAGAGAAGGAAATAATTTTCTAGCAAAGCCCTCAGGCCGGGCTGCTCTTCTTCTTCCAAAGAAGCTTTTTCAGATCGAAGAGTCGCCAATGCAAGAATTTCATGGCCATTCCAGTGATGTTTTAGACCTTGCATGGTCAAATTCCAACTGCCTTCTCTCTTCTTCCATGGATAAAACTGTTCGGCTATGGCAAGTTGGCTGCGACAGATGTCTAAACGTTTTCCATCACCCGAATTATGTGACTTGCATCCAATTCAATCCTGTCGATGAGAATTATTTTATTAGTGGTTCTGTAGACGGGAAAGTTAGGATCTGGGGAGTGGCTGAAAAACTAGTCGTAGACTGGGCAGAGGTCCGAGACGTAATCACTGCCATATCTTACCAACCAAATGGCAAAGGATTTGTAGTCGGCTCAGTCTTCGGCACATGCTCTTTCTATGAAGCCTCAGGTGAACATTGCTGGCTGGATGCTCAAATACACGTTGAAGGCAGAAAGAAAGCGTTGGGAAAAAGAATCACTGGAATACAGTTTTCTTGCGAAAACTTCCAAAGGGTGATGATAACATCCGAAGATTCAAAACTGCGCATATACGACTTCGATGGCCTCAAAATGGTTCAGAAATACAAAGCAGGTCTTCAAAAGTCAGGCAGTCAAATGTCTGCGTCCTTTACATCTAGTGGGAAACACATAGTCTCCGTCGGAGAAGATTCCCGGGTTTACTTCTGGAACTACGACGGAATCTCCCACCTTTCATCAAAAGAACCAAAATCCATTCAATCCTATGAGAATTTCTTGTCCGAAGGAGTGTCTGTTGCCGTTCCATGGCCAGGCTCGGGAACAGGAAAGAGTGGCATGGATAGCTTCCGGAACCTATCAGAGATTCTGTCTAGCCCGAGAGATTCCGAAGGATTCTTTTTTGGTAGTTGGTTCAACGCTGACAAAGCCTCAGCGACTTGGCCCGAAGAGAAACTTACTCTCCAATGTATGCCTTTCTTGGGAGCGAATGGAAGTCTTGTTGCTCCGGAAACTTGGGGCCTCGTGATCGTGACAGCCGGTTTCGATGGAATGATGAGAACCTTTCACAACTATGGACTGCCAATTCGGATTTAA 1242 45.49 MKFSPDGRYLASGGEDGVVRIWRVKLVDSSSCSLLNEGGFDETLREGNNFLAKPSGRAALLLPKKLFQIEESPMQEFHGHSSDVLDLAWSNSNCLLSSSMDKTVRLWQVGCDRCLNVFHHPNYVTCIQFNPVDENYFISGSVDGKVRIWGVAEKLVVDWAEVRDVITAISYQPNGKGFVVGSVFGTCSFYEASGEHCWLDAQIHVEGRKKALGKRITGIQFSCENFQRVMITSEDSKLRIYDFDGLKMVQKYKAGLQKSGSQMSASFTSSGKHIVSVGEDSRVYFWNYDGISHLSSKEPKSIQSYENFLSEGVSVAVPWPGSGTGKSGMDSFRNLSEILSSPRDSEGFFFGSWFNADKASATWPEEKLTLQCMPFLGANGSLVAPETWGLVIVTAGFDGMMRTFHNYGLPIRI 413
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 9062107 9064244 - Bda027872.1 Bda14g01058 21109

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda14g01058 413 SUPERFAMILY WD40 repeat-like 2 402 IPR036322 GO:0005515
Bda14g01058 413 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 117 149 - -
Bda14g01058 413 PRINTS G protein beta WD-40 repeat signature 10 24 IPR020472 -
Bda14g01058 413 PRINTS G protein beta WD-40 repeat signature 137 151 IPR020472 -
Bda14g01058 413 PRINTS G protein beta WD-40 repeat signature 95 109 IPR020472 -
Bda14g01058 413 SMART WD40_4 70 108 IPR001680 GO:0005515
Bda14g01058 413 SMART WD40_4 202 242 IPR001680 GO:0005515
Bda14g01058 413 SMART WD40_4 245 287 IPR001680 GO:0005515
Bda14g01058 413 SMART WD40_4 1 23 IPR001680 GO:0005515
Bda14g01058 413 SMART WD40_4 111 150 IPR001680 GO:0005515
Bda14g01058 413 SMART WD40_4 152 191 IPR001680 GO:0005515
Bda14g01058 413 Gene3D - 1 311 IPR015943 GO:0005515
Bda14g01058 413 ProSiteProfiles Trp-Asp (WD) repeats profile. 117 149 IPR001680 GO:0005515
Bda14g01058 413 ProSiteProfiles Trp-Asp (WD) repeats profile. 77 109 IPR001680 GO:0005515
Bda14g01058 413 PANTHER TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN 1 413 - -
Bda14g01058 413 Pfam WD domain, G-beta repeat 2 22 IPR001680 GO:0005515
Bda14g01058 413 Pfam WD domain, G-beta repeat 72 107 IPR001680 GO:0005515
Bda14g01058 413 Pfam WD domain, G-beta repeat 113 149 IPR001680 GO:0005515
Bda14g01058 413 PANTHER WD REPEAT DOMAIN 44 1 413 IPR040324 -
Bda14g01058 413 ProSiteProfiles Trp-Asp (WD) repeats profile. 1 25 IPR001680 GO:0005515
Bda14g01058 413 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1 25 - -
Bda14g01058 413 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 77 109 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda14g01058 K20241 WDR44, RAB11BP; WD repeat-containing protein 44 - zju:107427210 527.324
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda10g00359 Bda14g01058 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda10g00359 Bda-Chr10:34511239 Bda14g01058 Bda-Chr14:9062107 1.31E-161 dispersed
Bda14g01058 Bda-Chr14:9062107 Bda15g00789 Bda-Chr15:11794083 1.18E-114 dispersed
Bda11g01368 Bda-Chr11:16368883 Bda14g01058 Bda-Chr14:9062107 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1267 Blo04g00968 . . Bda10g00359 Bpe15g00398 . . . . . Cma03g01085 Cma07g00791 Car03g00975 Car07g00777 . . . Bhi03g01375 . . . Hepe04g1122 . . Cla01g01526 Cam01g1596 Cec04g1240 Cco04g1310 Clacu01g1620 Cmu01g1506 Cre04g1185 . . Cone6ag1293 . Lsi01g01138 . . Cme08g01072 . . . Bda14g01058 . Bpe06g00273 Bma03g01033 Bma06g00513 . Cmo03g01072 Cmo07g00814 . . . . . . . . . . . . . . . . . . . . . Csa06g02793 Chy02g01042 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003346 3 4 4 4 4 1 2 1 1 1 1 1 2 1 1 2 1 2 0 1 1 1 1 1 1 1 1 3 1 1 49
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda14g01058 Bda_Chr14 FPKM 25.624622 22.562662 0.0 0.0 0.0 0.0 0.0 0.0 0.0