Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda14g01065 ATGGCCGGTGGAGTGGCCGGCGACGGAGAGAGTACTCCCGGACTACTGTTGCTTGACCTTCTTCAAGACGTTATCGGTACCTCGGCTGGGACAGTCTTCAGCGACATGTTCAAGAAGGACTGTACCGATCTGGTGCGTCGGATCGCTCTCTTAAGCCACTTGTTTGAAGAGATTAGGGATTTGAAGATGGCCGGTGAATTTGGAGCTCCCGATGCGTCGACTTCGTCGCCTTCCTCTTCGAAAACCGGTAGTGGGAATGAGCTCTCCTGGCTATCGGATCTGGTTTTAGCTCTGAAGGCCGCCAAGCGACTTCTTTTCGTTGCTCGTACTTTCATTTCCGGCAATGGCTCTTCTGATGGAGCTGCCAAGAAAATAGCATTCCAATTTGAATGTGTTACATGGAAATTAGAGAAAGCATTGGGAAACATACCATTTGATCGGTTTGACATCTCAGAGGAAGTTCAAGAGCAGTTGGTAAGAGCACAATTGAGAAGAGCTGCCAAAAAGTATGGATCACCACCTTCAGTTACACAATCTGTTCTCTCTCAGGACAGAGAAATAAGCACATTATTATCAGAGCATTTGTCAAACGATGTTTCTTTTGAGAATTCGGATGGTATAGATGTTGACATTACTGTGAAGATGGATACTTTTTGCGACAGCAGTACTTTGATCAGCCATAGTAATCAACAGAGAACTCAATTGTTGGATAGAACGAGGAATGTTTCTACTTCAGATCTCTCTTCAAATGATGCTAATGCTGAAGGTCCCGACAACTCAGTAAATGAGAGTGTGGATGAGAACAAGAAGTCTGATGCAAATATTATACCTGACGATTTTTTATGCCCCATATCTCTAGAATTAATGAGAGACCCTGTCATTGTGTCCCCAGGACAGACGTATGAAAGATCCTACATTCAAAGATGGATAGATTGTGGCAACACAACATGTCCAAAAACCCAGCAGAAGCTTCAAAATTTAACTCTTAACCCGAATTACGTTCTGAGAAGTCTCATCTCTCAATGGTGCCTGAAGCACAATATTGAACAACCAACAGGATTAACCAATGGAAAAATCAAAAAGTTTGATGGAACATATCGCGATGTTTGTGCTGAAATAGCAGCCATTGAAGCTCTGGTTCGCAAACTCTCTGGCCATTCCCTTGAGGAGCAGAGAGCTGCAGTGACTGAACTCCGATCTCTATCCAAAAGAAGTACAGATAACAGAATACTAATAGCAGAAGCCGGAGCCATTCCAGCTCTAGTCAACCTTTTAACGTCAGACGATGTCTTAATACAAGAGAATGCAGTCACTTCTGTCCTTAACCTTTCGATATATGAAAACAACAAAGGACTCATCATGCTAGCTGGGGCTGTTCCTTCTATTGTCCAGGTTCTTAGGATCGGAAGCATGGAAGCTAGAAACCGGACTGAGTCTTTGGGAATTTTTTCCCGAAGACTGAAACCGACCCTGGGAGGGACTGGGACCGGACCACTCTTTTTTTTTACATGA 1512 43.98 MAGGVAGDGESTPGLLLLDLLQDVIGTSAGTVFSDMFKKDCTDLVRRIALLSHLFEEIRDLKMAGEFGAPDASTSSPSSSKTGSGNELSWLSDLVLALKAAKRLLFVARTFISGNGSSDGAAKKIAFQFECVTWKLEKALGNIPFDRFDISEEVQEQLVRAQLRRAAKKYGSPPSVTQSVLSQDREISTLLSEHLSNDVSFENSDGIDVDITVKMDTFCDSSTLISHSNQQRTQLLDRTRNVSTSDLSSNDANAEGPDNSVNESVDENKKSDANIIPDDFLCPISLELMRDPVIVSPGQTYERSYIQRWIDCGNTTCPKTQQKLQNLTLNPNYVLRSLISQWCLKHNIEQPTGLTNGKIKKFDGTYRDVCAEIAAIEALVRKLSGHSLEEQRAAVTELRSLSKRSTDNRILIAEAGAIPALVNLLTSDDVLIQENAVTSVLNLSIYENNKGLIMLAGAVPSIVQVLRIGSMEARNRTESLGIFSRRLKPTLGGTGTGPLFFFT 503
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 9155228 9158153 - Bda027880.1 Bda14g01065 21116
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda14g01065 503 PANTHER U BOX DOMAIN-CONTAINING 23 484 - -
Bda14g01065 503 MobiDBLite consensus disorder prediction 230 269 - -
Bda14g01065 503 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 273 349 IPR013083 -
Bda14g01065 503 ProSiteProfiles U-box domain profile. 275 349 IPR003613 GO:0004842|GO:0016567
Bda14g01065 503 MobiDBLite consensus disorder prediction 230 261 - -
Bda14g01065 503 Gene3D - 354 475 IPR011989 -
Bda14g01065 503 SUPERFAMILY ARM repeat 367 474 IPR016024 -
Bda14g01065 503 CDD RING-Ubox_PUB 280 322 IPR045210 -
Bda14g01065 503 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 416 458 IPR000225 GO:0005515
Bda14g01065 503 Pfam Armadillo/beta-catenin-like repeat 406 444 IPR000225 GO:0005515
Bda14g01065 503 SUPERFAMILY RING/U-box 274 350 - -
Bda14g01065 503 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 374 416 IPR000225 GO:0005515
Bda14g01065 503 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 11 23 484 - -
Bda14g01065 503 Pfam U-box domain 276 347 IPR003613 GO:0004842|GO:0016567
Bda14g01065 503 SMART arm_5 405 445 IPR000225 GO:0005515
Bda14g01065 503 SMART Ubox_2 279 342 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda14g01065 Bda-Chr14:9155228 Bda14g01078 Bda-Chr14:9435245 1.25E-09 dispersed
Bda14g01065 Bda-Chr14:9155228 Bda07g00590 Bda-Chr7:7230889 1.29E-83 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda14g01065 - - csv:101221534 567.77