Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda14g01078 ATGGCCGGTGGAGTGGCCGGCGACGGAGAGAGTACTCCCGGACTACTGTTGCTTGACCTTCTTCAAGACGTTATCGGTACCTCGGCTGGGAGAGTCTCCAGCGACATGTTCAAGAAGGACTGTACCGATCTGGTGCGTCGGATCGCTCTCTTAAGCCACTTGTTTGAAGAGATTAGGGATTTGAAGATGGCCGGTGAATTTGGAGCTCCCGATGCGTCGACTTCGTTGCCTTCCTCTTCGAAAACCGCTGCCAAGAAAATAGCATTCCAATTTGAATGTGTTACATGGAAATTAGAGAAAGCATTGGGAAACATACCATTTGATCGATTTGGCATCTCAGAGGAAGTTCAAGAGCAGGTCGAGTTGGTAAGAGCACAATTGAGAAGAGCTGCCAAAAAGTATGGATCACCACCTTCAGTTACACAATCTGTTCTCTCTCAGGACAGAGAAATAAGCATATTATTATCAGAGCATTTGTCAAACGATGTTTCTTTTGAGAATTCGGATGGTATAGATGTTGACATTACTGTGAAGATGGATACTTTTTGCGACAACAATACTTTGATCAGCCGTAGTAATGAACAGAGAACTCAATTGTTGGATAGAACGAGGAATGTTTCTACTTCAGATCTCTCTTCAAATGATGCTAGTGCTGAAGGTCCCGACAACTCAGTAAATGAGAGTGTGGATGAGAACAAGAAGTCTGATGCAAATATTATACCTGACGATTTTTTATGCCCCATATCTCTAGAATTAATGAGAGACCCTGTCATTGTGTCCACAGGACAGACGTATGAAAGATCCTACATTCAAAGATGGATAGATTGTGGCAACACAACATGTCCAAAAACCCAGCAGAAGCTTCAAAATTTAACTCTTACCCCGAATTACGTTCTGAGAAGTCTCATCTCTCAATGGTGCCTGAAGCACAATATTGAACAACCAACAGGATTAACCAATGGAAAAATCAAAAAGTTTGATGGAACATATCGCGATGTTTGTGCTGAAATAGCAGCCATTGAAGCTCTGGTTCGCAAACTCTCTGGCCATTCCCTTGAGGAGCAGAGAGCTGCAGTGACTGAACTGCGATCTCTATCCAAAAGAAGTACAGATAACAGAATACTAATAGCAGAAGCCGGAGCCATTCCAGCTCTAGTCAACCTTTTAACGTCAGACGATGTCTTAATACAAGAGAATGCAGTCACTTCTGTCCTTAACCTTTCAATATATGAAAACAACAAAGGACTCATCATGCTAGCTGGGGCTGTTCCTTCTATTGTCCAGGTTCTTAGGATCGGAAGCATGGAAGCTAGAGAAAATGCAGCTGCTACCCTCTTCAGCCTCTCTCTTGCAGATGAAAACCGGATAATAATTGGCGCATCTGGGGCAATCCCAGCATTGGTAGAATTGCTTCAAAACGGGAGCACGAGAGGTAAGAAAGATGCAGCCACAGCTCTATTCAATTTATGCATTTATCAGGGCAACAAAGGCCGAGCTGTAAGGGCCGGAATTGTCTCGGCCCTGTTGAAGATGCTTACGGACTCAAATTCATGCATGGTCGATGAGGCTCTTACAATAATGTCTGTTCTTGCCAATCATCAAGAAGCAAAAGTTGCCATTGTAAAAGCCAGCACCATACCAGTTTTGATCGACCTCGTGAGGACGAGTTTGCCTCGTAATAAAGAAAATTCTGCTGCCATTTTACTTGCGTTGTGTAAGAGAGATTCCGAGAATCTCGCATGTATCAGTAGGCTTGGAGCCATAATACCACTAACCGAGCTTGCAAGAAGTGGCACGGAAAGAGCGAAAAGGAAAGCTAATTCATTGCTGGAGCATCTTCGAAAAATACAGCAGGATTAG 1860 43.66 MAGGVAGDGESTPGLLLLDLLQDVIGTSAGRVSSDMFKKDCTDLVRRIALLSHLFEEIRDLKMAGEFGAPDASTSLPSSSKTAAKKIAFQFECVTWKLEKALGNIPFDRFGISEEVQEQVELVRAQLRRAAKKYGSPPSVTQSVLSQDREISILLSEHLSNDVSFENSDGIDVDITVKMDTFCDNNTLISRSNEQRTQLLDRTRNVSTSDLSSNDASAEGPDNSVNESVDENKKSDANIIPDDFLCPISLELMRDPVIVSTGQTYERSYIQRWIDCGNTTCPKTQQKLQNLTLTPNYVLRSLISQWCLKHNIEQPTGLTNGKIKKFDGTYRDVCAEIAAIEALVRKLSGHSLEEQRAAVTELRSLSKRSTDNRILIAEAGAIPALVNLLTSDDVLIQENAVTSVLNLSIYENNKGLIMLAGAVPSIVQVLRIGSMEARENAAATLFSLSLADENRIIIGASGAIPALVELLQNGSTRGKKDAATALFNLCIYQGNKGRAVRAGIVSALLKMLTDSNSCMVDEALTIMSVLANHQEAKVAIVKASTIPVLIDLVRTSLPRNKENSAAILLALCKRDSENLACISRLGAIIPLTELARSGTERAKRKANSLLEHLRKIQQD 619
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 9435245 9438632 + Bda027901.1 Bda14g01078 21129

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda14g01078 619 MobiDBLite consensus disorder prediction 194 233 - -
Bda14g01078 619 Gene3D - 433 517 IPR011989 -
Bda14g01078 619 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 11 23 616 - -
Bda14g01078 619 SUPERFAMILY ARM repeat 334 613 IPR016024 -
Bda14g01078 619 SMART Ubox_2 243 306 IPR003613 GO:0004842|GO:0016567
Bda14g01078 619 MobiDBLite consensus disorder prediction 194 225 - -
Bda14g01078 619 PANTHER U BOX DOMAIN-CONTAINING 23 616 - -
Bda14g01078 619 Pfam U-box domain 240 311 IPR003613 GO:0004842|GO:0016567
Bda14g01078 619 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 222 313 IPR013083 -
Bda14g01078 619 SMART arm_5 492 532 IPR000225 GO:0005515
Bda14g01078 619 SMART arm_5 369 409 IPR000225 GO:0005515
Bda14g01078 619 SMART arm_5 410 450 IPR000225 GO:0005515
Bda14g01078 619 SMART arm_5 451 491 IPR000225 GO:0005515
Bda14g01078 619 SMART arm_5 533 573 IPR000225 GO:0005515
Bda14g01078 619 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 338 380 IPR000225 GO:0005515
Bda14g01078 619 Gene3D - 314 432 IPR011989 -
Bda14g01078 619 Pfam Armadillo/beta-catenin-like repeat 452 490 IPR000225 GO:0005515
Bda14g01078 619 Pfam Armadillo/beta-catenin-like repeat 370 408 IPR000225 GO:0005515
Bda14g01078 619 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 462 504 IPR000225 GO:0005515
Bda14g01078 619 CDD RING-Ubox_PUB 244 286 IPR045210 -
Bda14g01078 619 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 380 422 IPR000225 GO:0005515
Bda14g01078 619 Coils Coil 599 619 - -
Bda14g01078 619 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 421 463 IPR000225 GO:0005515
Bda14g01078 619 Gene3D - 518 619 IPR011989 -
Bda14g01078 619 SUPERFAMILY RING/U-box 238 314 - -
Bda14g01078 619 Coils Coil 113 133 - -
Bda14g01078 619 ProSiteProfiles U-box domain profile. 239 313 IPR003613 GO:0004842|GO:0016567
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda14g01078 - - - csv:101221534 844.728
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda04g00160 Bda-Chr4:4613513 Bda14g01078 Bda-Chr14:9435245 2.04E-07 dispersed
Bda04g00184 Bda-Chr4:5644054 Bda14g01078 Bda-Chr14:9435245 2.11E-07 dispersed
Bda09g00799 Bda-Chr9:15390678 Bda14g01078 Bda-Chr14:9435245 4.82E-07 dispersed
Bda09g01582 Bda-Chr9:47276754 Bda14g01078 Bda-Chr14:9435245 9.48E-63 dispersed
Bda14g00363 Bda-Chr14:2631344 Bda14g01078 Bda-Chr14:9435245 1.99E-157 dispersed
Bda14g01065 Bda-Chr14:9155228 Bda14g01078 Bda-Chr14:9435245 1.25E-09 dispersed
Bda14g01078 Bda-Chr14:9435245 Bda15g00313 Bda-Chr15:5969027 8.85E-98 dispersed
Bda14g01078 Bda-Chr14:9435245 Bda07g00590 Bda-Chr7:7230889 1.81E-164 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bda13g01704 . 1 1018 U-box Gene Family AT5G15400 73.3 0.0e+00 1481.1
Bda04g00508 . 1 781 U-box Gene Family AT3G54790 52.0 1.6e-125 447.2
Bda04g00003 . 1 576 U-box Gene Family AT2G23140 58.7 1.5e-76 284.3
Bda14g01265 . 195 724 U-box Gene Family AT2G23140 53.5 1.7e-72 270.8
Bda09g01286 . 1 359 U-box Gene Family AT4G21350 58.4 4.8e-115 411.4
Bda01g01749 . 1 360 U-box Gene Family AT4G21350 61.0 1.1e-114 410.2
Bda12g00757 . 134 457 U-box Gene Family AT3G07360 52.6 1.3e-84 310.1
Bda10g00536 . 134 457 U-box Gene Family AT3G07360 58.2 2.6e-77 285.8
Bda14g01078 . 202 414 U-box Gene Family AT1G71020 64.5 9.9e-73 271.2
Bda14g01065 . 238 467 U-box Gene Family AT1G71020 60.2 6.0e-70 261.9
Bda14g00363 . 213 385 U-box Gene Family AT1G71020 57.4 1.2e-49 194.5
Bda07g00590 CCT 254 421 U-box Gene Family AT1G71020 57.2 1.6e-46 184.1
Bda02g00818 CCT 249 418 U-box Gene Family AT1G71020 55.6 2.1e-46 183.7
Bda14g01078 . 1 618 U-box Gene Family AT1G23030 55.7 1.7e-106 383.6
Bda07g00590 CCT 89 632 U-box Gene Family AT2G28830 57.8 3.6e-101 365.9
Bda02g00818 CCT 89 634 U-box Gene Family AT2G28830 58.1 9.1e-97 351.3
Bda07g00590 CCT 1 630 U-box Gene Family AT3G46510 67.8 1.7e-155 546.6
Bda02g00818 CCT 1 627 U-box Gene Family AT3G46510 64.4 1.0e-144 510.8
Bda14g00363 . 4 587 U-box Gene Family AT3G46510 59.2 1.3e-120 430.6
Bda01g01561 . 26 639 U-box Gene Family AT3G46510 51.4 1.1e-95 347.8
Bda14g00363 . 3 588 U-box Gene Family AT3G54850 67.0 1.6e-150 530.0
Bda07g00590 CCT 8 621 U-box Gene Family AT3G54850 54.9 2.4e-103 373.2
Bda01g01561 . 34 643 U-box Gene Family AT5G42340 63.6 7.3e-143 504.6
Bda06g00438 . 18 636 U-box Gene Family AT5G42340 59.1 6.7e-112 401.7
Bda01g00060 . 9 655 U-box Gene Family AT5G01830 56.2 3.0e-192 668.7
Bda07g00963 . 1 600 U-box Gene Family AT1G29340 53.1 3.2e-192 668.7
Bda03g01627 BCT 3 405 U-box Gene Family AT3G52450 55.6 5.7e-128 454.5
Bda09g01389 . 25 167 U-box Gene Family AT3G52450 51.4 8.5e-39 158.3
Bda03g01627 BCT 3 404 U-box Gene Family AT2G35930 56.0 1.0e-126 450.3
Bda05g01129 BCT 3 204 U-box Gene Family AT2G35930 53.7 3.8e-57 219.2
Bda09g01389 . 25 166 U-box Gene Family AT2G35930 50.3 4.4e-37 152.5
Bda04g00334 . 58 216 U-box Gene Family AT5G64660 60.0 2.5e-48 189.9
Bda04g00334 . 58 216 U-box Gene Family AT5G09800 59.1 3.1e-43 172.9
Bda14g01286 . 1 449 U-box Gene Family AT3G49810 71.9 6.0e-181 630.6
Bda11g01486 . 1 450 U-box Gene Family AT3G49810 70.5 1.6e-178 622.5
Bda14g01286 . 1 449 U-box Gene Family AT5G65920 67.4 7.8e-165 577.0
Bda11g01486 . 1 450 U-box Gene Family AT5G65920 66.3 3.9e-164 574.7
Bda11g00250 . 33 822 U-box Gene Family AT2G45910 50.6 1.3e-221 766.5
Bda06g00764 . 17 788 U-box Gene Family AT4G25160 51.8 1.1e-209 726.9
Bda01g01564 BCT 4 813 U-box Gene Family AT1G76390 63.7 1.0e-279 959.5
Bda11g00977 BCT 12 812 U-box Gene Family AT1G76390 60.4 2.4e-265 911.8
Bda01g01564 BCT 7 813 U-box Gene Family AT1G20780 64.0 1.0e-284 976.1
Bda11g00977 BCT 12 812 U-box Gene Family AT1G20780 60.2 2.6e-267 918.3
Bda10g00010 . 1 598 U-box Gene Family AT5G67530 76.4 2.2e-263 904.8
Bda13g00041 BCT 1 524 U-box Gene Family AT1G04510 72.4 3.9e-224 774.2
Bda11g00647 BCT 2 522 U-box Gene Family AT1G04510 72.0 8.5e-219 756.5
Bda13g00041 BCT 1 488 U-box Gene Family AT2G33340 72.7 3.0e-210 728.0
Bda11g00647 BCT 2 486 U-box Gene Family AT2G33340 72.4 4.5e-206 714.1
Bda05g00836 . 10 279 U-box Gene Family AT3G07370 67.0 2.0e-105 379.0
Bda12g00756 . 8 277 U-box Gene Family AT3G07370 61.5 4.8e-96 347.8
Bda12g00767 . 4 118 U-box Gene Family AT3G07370 61.7 2.1e-38 156.4
Bda13g01704 . 1 1018 U-box Gene Family AT5G15400 73.3 0.0e+00 1481.1
Bda04g00508 . 1 781 U-box Gene Family AT3G54790 52.0 1.6e-125 447.2
Bda04g00003 . 1 576 U-box Gene Family AT2G23140 58.7 1.5e-76 284.3
Bda14g01265 . 195 724 U-box Gene Family AT2G23140 53.5 1.7e-72 270.8
Bda09g01286 . 1 359 U-box Gene Family AT4G21350 58.4 4.8e-115 411.4
Bda01g01749 . 1 360 U-box Gene Family AT4G21350 61.0 1.1e-114 410.2
Bda12g00757 . 134 457 U-box Gene Family AT3G07360 52.6 1.3e-84 310.1
Bda10g00536 . 134 457 U-box Gene Family AT3G07360 58.2 2.6e-77 285.8
Bda14g01078 . 202 414 U-box Gene Family AT1G71020 64.5 9.9e-73 271.2
Bda14g01065 . 238 467 U-box Gene Family AT1G71020 60.2 6.0e-70 261.9
Bda14g00363 . 213 385 U-box Gene Family AT1G71020 57.4 1.2e-49 194.5
Bda07g00590 CCT 254 421 U-box Gene Family AT1G71020 57.2 1.6e-46 184.1
Bda02g00818 CCT 249 418 U-box Gene Family AT1G71020 55.6 2.1e-46 183.7
Bda14g01078 . 1 618 U-box Gene Family AT1G23030 55.7 1.7e-106 383.6
Bda07g00590 CCT 89 632 U-box Gene Family AT2G28830 57.8 3.6e-101 365.9
Bda02g00818 CCT 89 634 U-box Gene Family AT2G28830 58.1 9.1e-97 351.3
Bda07g00590 CCT 1 630 U-box Gene Family AT3G46510 67.8 1.7e-155 546.6
Bda02g00818 CCT 1 627 U-box Gene Family AT3G46510 64.4 1.0e-144 510.8
Bda14g00363 . 4 587 U-box Gene Family AT3G46510 59.2 1.3e-120 430.6
Bda01g01561 . 26 639 U-box Gene Family AT3G46510 51.4 1.1e-95 347.8
Bda14g00363 . 3 588 U-box Gene Family AT3G54850 67.0 1.6e-150 530.0
Bda07g00590 CCT 8 621 U-box Gene Family AT3G54850 54.9 2.4e-103 373.2
Bda01g01561 . 34 643 U-box Gene Family AT5G42340 63.6 7.3e-143 504.6
Bda06g00438 . 18 636 U-box Gene Family AT5G42340 59.1 6.7e-112 401.7
Bda01g00060 . 9 655 U-box Gene Family AT5G01830 56.2 3.0e-192 668.7
Bda07g00963 . 1 600 U-box Gene Family AT1G29340 53.1 3.2e-192 668.7
Bda03g01627 BCT 3 405 U-box Gene Family AT3G52450 55.6 5.7e-128 454.5
Bda09g01389 . 25 167 U-box Gene Family AT3G52450 51.4 8.5e-39 158.3
Bda03g01627 BCT 3 404 U-box Gene Family AT2G35930 56.0 1.0e-126 450.3
Bda05g01129 BCT 3 204 U-box Gene Family AT2G35930 53.7 3.8e-57 219.2
Bda09g01389 . 25 166 U-box Gene Family AT2G35930 50.3 4.4e-37 152.5
Bda04g00334 . 58 216 U-box Gene Family AT5G64660 60.0 2.5e-48 189.9
Bda04g00334 . 58 216 U-box Gene Family AT5G09800 59.1 3.1e-43 172.9
Bda14g01286 . 1 449 U-box Gene Family AT3G49810 71.9 6.0e-181 630.6
Bda11g01486 . 1 450 U-box Gene Family AT3G49810 70.5 1.6e-178 622.5
Bda14g01286 . 1 449 U-box Gene Family AT5G65920 67.4 7.8e-165 577.0
Bda11g01486 . 1 450 U-box Gene Family AT5G65920 66.3 3.9e-164 574.7
Bda11g00250 . 33 822 U-box Gene Family AT2G45910 50.6 1.3e-221 766.5
Bda06g00764 . 17 788 U-box Gene Family AT4G25160 51.8 1.1e-209 726.9
Bda01g01564 BCT 4 813 U-box Gene Family AT1G76390 63.7 1.0e-279 959.5
Bda11g00977 BCT 12 812 U-box Gene Family AT1G76390 60.4 2.4e-265 911.8
Bda01g01564 BCT 7 813 U-box Gene Family AT1G20780 64.0 1.0e-284 976.1
Bda11g00977 BCT 12 812 U-box Gene Family AT1G20780 60.2 2.6e-267 918.3
Bda10g00010 . 1 598 U-box Gene Family AT5G67530 76.4 2.2e-263 904.8
Bda13g00041 BCT 1 524 U-box Gene Family AT1G04510 72.4 3.9e-224 774.2
Bda11g00647 BCT 2 522 U-box Gene Family AT1G04510 72.0 8.5e-219 756.5
Bda13g00041 BCT 1 488 U-box Gene Family AT2G33340 72.7 3.0e-210 728.0
Bda11g00647 BCT 2 486 U-box Gene Family AT2G33340 72.4 4.5e-206 714.1
Bda05g00836 . 10 279 U-box Gene Family AT3G07370 67.0 2.0e-105 379.0
Bda12g00756 . 8 277 U-box Gene Family AT3G07370 61.5 4.8e-96 347.8
Bda12g00767 . 4 118 U-box Gene Family AT3G07370 61.7 2.1e-38 156.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005370 2 1 2 1 2 1 2 1 1 0 1 1 2 1 1 2 1 2 2 1 1 2 1 1 1 1 1 2 2 1 40