Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda14g01078 ATGGCCGGTGGAGTGGCCGGCGACGGAGAGAGTACTCCCGGACTACTGTTGCTTGACCTTCTTCAAGACGTTATCGGTACCTCGGCTGGGAGAGTCTCCAGCGACATGTTCAAGAAGGACTGTACCGATCTGGTGCGTCGGATCGCTCTCTTAAGCCACTTGTTTGAAGAGATTAGGGATTTGAAGATGGCCGGTGAATTTGGAGCTCCCGATGCGTCGACTTCGTTGCCTTCCTCTTCGAAAACCGCTGCCAAGAAAATAGCATTCCAATTTGAATGTGTTACATGGAAATTAGAGAAAGCATTGGGAAACATACCATTTGATCGATTTGGCATCTCAGAGGAAGTTCAAGAGCAGGTCGAGTTGGTAAGAGCACAATTGAGAAGAGCTGCCAAAAAGTATGGATCACCACCTTCAGTTACACAATCTGTTCTCTCTCAGGACAGAGAAATAAGCATATTATTATCAGAGCATTTGTCAAACGATGTTTCTTTTGAGAATTCGGATGGTATAGATGTTGACATTACTGTGAAGATGGATACTTTTTGCGACAACAATACTTTGATCAGCCGTAGTAATGAACAGAGAACTCAATTGTTGGATAGAACGAGGAATGTTTCTACTTCAGATCTCTCTTCAAATGATGCTAGTGCTGAAGGTCCCGACAACTCAGTAAATGAGAGTGTGGATGAGAACAAGAAGTCTGATGCAAATATTATACCTGACGATTTTTTATGCCCCATATCTCTAGAATTAATGAGAGACCCTGTCATTGTGTCCACAGGACAGACGTATGAAAGATCCTACATTCAAAGATGGATAGATTGTGGCAACACAACATGTCCAAAAACCCAGCAGAAGCTTCAAAATTTAACTCTTACCCCGAATTACGTTCTGAGAAGTCTCATCTCTCAATGGTGCCTGAAGCACAATATTGAACAACCAACAGGATTAACCAATGGAAAAATCAAAAAGTTTGATGGAACATATCGCGATGTTTGTGCTGAAATAGCAGCCATTGAAGCTCTGGTTCGCAAACTCTCTGGCCATTCCCTTGAGGAGCAGAGAGCTGCAGTGACTGAACTGCGATCTCTATCCAAAAGAAGTACAGATAACAGAATACTAATAGCAGAAGCCGGAGCCATTCCAGCTCTAGTCAACCTTTTAACGTCAGACGATGTCTTAATACAAGAGAATGCAGTCACTTCTGTCCTTAACCTTTCAATATATGAAAACAACAAAGGACTCATCATGCTAGCTGGGGCTGTTCCTTCTATTGTCCAGGTTCTTAGGATCGGAAGCATGGAAGCTAGAGAAAATGCAGCTGCTACCCTCTTCAGCCTCTCTCTTGCAGATGAAAACCGGATAATAATTGGCGCATCTGGGGCAATCCCAGCATTGGTAGAATTGCTTCAAAACGGGAGCACGAGAGGTAAGAAAGATGCAGCCACAGCTCTATTCAATTTATGCATTTATCAGGGCAACAAAGGCCGAGCTGTAAGGGCCGGAATTGTCTCGGCCCTGTTGAAGATGCTTACGGACTCAAATTCATGCATGGTCGATGAGGCTCTTACAATAATGTCTGTTCTTGCCAATCATCAAGAAGCAAAAGTTGCCATTGTAAAAGCCAGCACCATACCAGTTTTGATCGACCTCGTGAGGACGAGTTTGCCTCGTAATAAAGAAAATTCTGCTGCCATTTTACTTGCGTTGTGTAAGAGAGATTCCGAGAATCTCGCATGTATCAGTAGGCTTGGAGCCATAATACCACTAACCGAGCTTGCAAGAAGTGGCACGGAAAGAGCGAAAAGGAAAGCTAATTCATTGCTGGAGCATCTTCGAAAAATACAGCAGGATTAG 1860 43.66 MAGGVAGDGESTPGLLLLDLLQDVIGTSAGRVSSDMFKKDCTDLVRRIALLSHLFEEIRDLKMAGEFGAPDASTSLPSSSKTAAKKIAFQFECVTWKLEKALGNIPFDRFGISEEVQEQVELVRAQLRRAAKKYGSPPSVTQSVLSQDREISILLSEHLSNDVSFENSDGIDVDITVKMDTFCDNNTLISRSNEQRTQLLDRTRNVSTSDLSSNDASAEGPDNSVNESVDENKKSDANIIPDDFLCPISLELMRDPVIVSTGQTYERSYIQRWIDCGNTTCPKTQQKLQNLTLTPNYVLRSLISQWCLKHNIEQPTGLTNGKIKKFDGTYRDVCAEIAAIEALVRKLSGHSLEEQRAAVTELRSLSKRSTDNRILIAEAGAIPALVNLLTSDDVLIQENAVTSVLNLSIYENNKGLIMLAGAVPSIVQVLRIGSMEARENAAATLFSLSLADENRIIIGASGAIPALVELLQNGSTRGKKDAATALFNLCIYQGNKGRAVRAGIVSALLKMLTDSNSCMVDEALTIMSVLANHQEAKVAIVKASTIPVLIDLVRTSLPRNKENSAAILLALCKRDSENLACISRLGAIIPLTELARSGTERAKRKANSLLEHLRKIQQD 619
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 9435245 9438632 + Bda027901.1 Bda14g01078 21129
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda14g01078 619 MobiDBLite consensus disorder prediction 194 233 - -
Bda14g01078 619 Gene3D - 433 517 IPR011989 -
Bda14g01078 619 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 11 23 616 - -
Bda14g01078 619 SUPERFAMILY ARM repeat 334 613 IPR016024 -
Bda14g01078 619 SMART Ubox_2 243 306 IPR003613 GO:0004842|GO:0016567
Bda14g01078 619 MobiDBLite consensus disorder prediction 194 225 - -
Bda14g01078 619 PANTHER U BOX DOMAIN-CONTAINING 23 616 - -
Bda14g01078 619 Pfam U-box domain 240 311 IPR003613 GO:0004842|GO:0016567
Bda14g01078 619 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 222 313 IPR013083 -
Bda14g01078 619 SMART arm_5 492 532 IPR000225 GO:0005515
Bda14g01078 619 SMART arm_5 369 409 IPR000225 GO:0005515
Bda14g01078 619 SMART arm_5 410 450 IPR000225 GO:0005515
Bda14g01078 619 SMART arm_5 451 491 IPR000225 GO:0005515
Bda14g01078 619 SMART arm_5 533 573 IPR000225 GO:0005515
Bda14g01078 619 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 338 380 IPR000225 GO:0005515
Bda14g01078 619 Gene3D - 314 432 IPR011989 -
Bda14g01078 619 Pfam Armadillo/beta-catenin-like repeat 452 490 IPR000225 GO:0005515
Bda14g01078 619 Pfam Armadillo/beta-catenin-like repeat 370 408 IPR000225 GO:0005515
Bda14g01078 619 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 462 504 IPR000225 GO:0005515
Bda14g01078 619 CDD RING-Ubox_PUB 244 286 IPR045210 -
Bda14g01078 619 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 380 422 IPR000225 GO:0005515
Bda14g01078 619 Coils Coil 599 619 - -
Bda14g01078 619 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 421 463 IPR000225 GO:0005515
Bda14g01078 619 Gene3D - 518 619 IPR011989 -
Bda14g01078 619 SUPERFAMILY RING/U-box 238 314 - -
Bda14g01078 619 Coils Coil 113 133 - -
Bda14g01078 619 ProSiteProfiles U-box domain profile. 239 313 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda04g00160 Bda-Chr4:4613513 Bda14g01078 Bda-Chr14:9435245 2.04E-07 dispersed
Bda04g00184 Bda-Chr4:5644054 Bda14g01078 Bda-Chr14:9435245 2.11E-07 dispersed
Bda09g00799 Bda-Chr9:15390678 Bda14g01078 Bda-Chr14:9435245 4.82E-07 dispersed
Bda09g01582 Bda-Chr9:47276754 Bda14g01078 Bda-Chr14:9435245 9.48E-63 dispersed
Bda14g00363 Bda-Chr14:2631344 Bda14g01078 Bda-Chr14:9435245 1.99E-157 dispersed
Bda14g01065 Bda-Chr14:9155228 Bda14g01078 Bda-Chr14:9435245 1.25E-09 dispersed
Bda14g01078 Bda-Chr14:9435245 Bda15g00313 Bda-Chr15:5969027 8.85E-98 dispersed
Bda14g01078 Bda-Chr14:9435245 Bda07g00590 Bda-Chr7:7230889 1.81E-164 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda14g01078 - - csv:101221534 844.728