Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda14g01105 GACGATGATTCGGATCAGCATGTTGAGTTTGCTTCTGGGAACGTGCATCTCATCACAACCAAAGAAAGTTGGGATCAAAAGTTGGCAGAAGCTAGAAGGGATGGCAAAATGGTCATTGCCAACTTCAGTGCAACATGGTGTGGTCCTTGTAAGATGATTGCTCCATTCTACGGAGAGTTGTCTGAGAAATATCCATCCGTGATGTTTCTGTTAGTTGATGTCGACGAACTGACGGAGTTCAGCACTTCTTGGGACATTAAAGCCACCCCAACATTTTTCTTTCTAAGAAACGGGCAGCAAGTTGACAAACTAGTGGGGGCCAACAAACCCGAGCTGCAAAAAAAGATGTCCAGTATTGCAGATTCGGCTGGATCTTAG 378 45.24 DDDSDQHVEFASGNVHLITTKESWDQKLAEARRDGKMVIANFSATWCGPCKMIAPFYGELSEKYPSVMFLLVDVDELTEFSTSWDIKATPTFFFLRNGQQVDKLVGANKPELQKKMSSIADSAGS 125
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 9958040 9959478 + Bda027936.1 Bda14g01105 21156

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda14g01105 125 PANTHER THIOREDOXIN 2 123 - -
Bda14g01105 125 PANTHER THIOREDOXIN 2 123 - -
Bda14g01105 125 ProSiteProfiles Thioredoxin domain profile. 1 121 IPR013766 -
Bda14g01105 125 CDD TRX_family 22 115 - -
Bda14g01105 125 SUPERFAMILY Thioredoxin-like 10 118 IPR036249 -
Bda14g01105 125 PRINTS Thioredoxin family signature 38 46 - -
Bda14g01105 125 PRINTS Thioredoxin family signature 46 55 - -
Bda14g01105 125 PRINTS Thioredoxin family signature 85 96 - -
Bda14g01105 125 Pfam Thioredoxin 18 116 IPR013766 -
Bda14g01105 125 Gene3D Glutaredoxin 1 124 - -
Bda14g01105 125 ProSitePatterns Thioredoxin family active site. 39 57 IPR017937 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda14g01105 K03671 trxA; thioredoxin 1 - egr:104425123 219.55
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda14g01105 Bda15g00557 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g00069 Bda-Chr1:11816690 Bda14g01105 Bda-Chr14:9958040 1.72E-80 dispersed
Bda03g00717 Bda-Chr3:6078197 Bda14g01105 Bda-Chr14:9958040 4.22E-16 dispersed
Bda14g01105 Bda-Chr14:9958040 Bda01g01515 Bda-Chr1:50998471 6.19E-30 dispersed
Bda14g01105 Bda-Chr14:9958040 Bda01g00325 Bda-Chr1:28505057 2.13E-16 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g186 . . . Bda15g00557 . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone2ag0774 . . . . . . . . . . Bda14g01105 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008269 2 2 0 1 0 1 1 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 0 1 1 0 4 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda14g01105 Bda_Chr14 FPKM 7.676617 0.0 0.0 0.0 0.0 0.0 0.0 0.0 2.653678