Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bda14g01207 | ATGGAAAGCGGTTTTGGACAATCAACAAGCGTGCCACCACAAAATCCGTCTTGTTCAAGAAATAATAGCAATGATGCAGGCGATTTTGAGTGCAATATTTGCTTTGAATTGCCTCAAGACCCCATTGTTACTCTCTGTGGACATCTCTTTTGCTGGCCTTGCTTGTACAGATGGCTGCATCATCATTCTCATTCTCAAGAATGCCCAGTTTGTAAGGCTCTTGTTCAGGAAGATAAGTTGGTTCCTCTCTACGGCAGGGGCAAAACTCAGACTGATCCGAGATCGAAATCATATCCTCAGTTTGATATTCCCAATCGCCCGGCTGGTCAACGACCAGAAACCGCTCCTCCACCAATGTCAAACCAGTTCACTAATTACGGGTTTGGATTAACAGGTGGTTTTGCACCAGCAACTACTGCAAGAATCAGGTAA | 432 | 44.91 | MESGFGQSTSVPPQNPSCSRNNSNDAGDFECNICFELPQDPIVTLCGHLFCWPCLYRWLHHHSHSQECPVCKALVQEDKLVPLYGRGKTQTDPRSKSYPQFDIPNRPAGQRPETAPPPMSNQFTNYGFGLTGGFAPATTARIR | 143 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
14 | 12051870 | 12052301 | + | Bda028065.1 | Bda14g01207 | 21258 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bda14g01207 | 143 | ProSitePatterns | Zinc finger RING-type signature. | 46 | 55 | IPR017907 | - | |
Bda14g01207 | 143 | ProSiteProfiles | Zinc finger RING-type profile. | 31 | 72 | IPR001841 | - | |
Bda14g01207 | 143 | PANTHER | RING ZINC FINGER PROTEIN-RELATED | 2 | 142 | - | - | |
Bda14g01207 | 143 | MobiDBLite | consensus disorder prediction | 1 | 21 | - | - | |
Bda14g01207 | 143 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 14 | 85 | IPR013083 | - | |
Bda14g01207 | 143 | SMART | ring_2 | 31 | 71 | IPR001841 | - | |
Bda14g01207 | 143 | MobiDBLite | consensus disorder prediction | 85 | 116 | - | - | |
Bda14g01207 | 143 | CDD | RING-HC_AtRMA_like | 29 | 73 | - | - | |
Bda14g01207 | 143 | SUPERFAMILY | RING/U-box | 27 | 84 | - | - | |
Bda14g01207 | 143 | Pfam | Zinc finger, C3HC4 type (RING finger) | 29 | 76 | - | - | |
Bda14g01207 | 143 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED | 2 | 142 | IPR045103 | GO:0005783|GO:0006511|GO:0061630 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Bda10g00322 | Bda14g01207 | CCT |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bda10g00322 | Bda-Chr10:33200560 | Bda14g01207 | Bda-Chr14:12051870 | 4.39E-83 | dispersed | |
Bda14g01207 | Bda-Chr14:12051870 | Bda07g00293 | Bda-Chr7:4041845 | 2.96E-29 | dispersed | |
Bda14g01207 | Bda-Chr14:12051870 | Bda01g00547 | Bda-Chr1:32387548 | 7.78E-68 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bda14g01207 | K10666 | - | qsu:112032934 | 271.937 |