Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda14g01211 ATGGGTTGGCTAACTAAAATTCTTAAAGGTTCTAGCCACAAAATCTCAGAAGGACAATATCATAGCAAATATGAAGACGAGAGAATTTGGGATGAACCTCATAATTCTGTGGAGGAAATGACAGAATTTGATCAAGGAGAAATTGATTATGCTATTGCACTATCCCTTGCAGAAGAGGATGAAAAAGGCATGGAGGAAGAAGCTAATAAAGGGTCCATACCAGAAGAAGATAAAAAAAGTACATCAGCAGAAGAAGATCCAAAAAGGGCAGTTGCAGAAGAAGATCAAAAAGGGAAAAAAGTGATAATTCTTGAAGAATCCGAATCAGATGAAGATGAGCCAGCTGCTAAAGTTCAACTAGACGAAGATGAACAGCTTGCGAAGGCACTTCAAGAAAGCTTAAACGTGTCTCCCCCTAGATACAATTCTGGAAACTTTTTCCAACCATATCCTTTCTTTCCAGCTGGATACCGAATTTGTGCTGGCTGCAACACTGGAATTGGTCATGGACGATTTTTAAGTTGTATGGATGCTGTTTGGCATCCAGAATGTTTTCGTTGTCATGCTTGCAACCAGCCAATCACTGATTATGAGTTTTCCATGTCTGGAAATCGCCCTTATCATAAATCATGCTATAAGGAGAAGCATCACCCCAGATGTGATGTTTGCAAGAATTTTATCCCTACAAATTCTGCTGGTTTAGTTGAGTACAGAGCACATCCATTTTGGCATCAGAAGTACTGCCCCTCCCACGAACGAGATGGAACTCCTCGATGTTGTAGCTGTGAAAGAATGGAGCCAAGGGACACAAATTATCTGATTCTTGATGATGGGAGAAAGCTATGTTTAGAGTGTTTAGATTCTTCGATCATGGATACTCATGAGTGCCAACCTCTATACCTTGAAATTCAAGATTTTTATGAAGGCTTGAATATGAAGGTGGAACAACAAATTCCGATGCTCTTGGTTGAAAGACAAGCATTAAACGAGGCACTTGAGGGTGAAAAAAATGGTCATCATCACATGCCCGAGACTAGAGGACTCTGCTTGTCCGAAGAGCAGACAGTTGCCACAATATCAAGGAGACCAAGGATTGGGGCAGGTCACAGAATCTTAGACATGTTTACAGAGCCATATAGGTTGATCCGTCGATGTGAAGTTACAGCAATTCTTGTTTTATTTGGGCTTCCAAGGTTGTTGACCGGATCGATTTTGGCTCACGAGATGATGCATGCATGGCTAAGGCTCAAAGGTTATCCCAACTTAAGTCCCGAGGTTGAAGAAGGTATTTGCCAAGTGTTGGCTCATATGTGGCTAGACTCGGAGATGTATTCCAGCCCTGGAAACGACTTGCCATCGTCATCGTCATCATCTTCGTCGTCGTCACCTTCCTCGTCTTCTGTTCAAGTTGCTTCAAAGAAGGGTGTTCGATCGGAGCCTGAGAAGAAACTATGTGAGTTTTTCAAACACCAAATAGAGTCTGATTCGTCATCTGCTTATGGAGATGGATTTAGGATAGGCAATAAGGCTGTCACCGAATATGGTCTTAGGAGGACCCTTGACCACATTAAGATAACTGGTACCTTTCCTTTTTGA 1596 41.98 MGWLTKILKGSSHKISEGQYHSKYEDERIWDEPHNSVEEMTEFDQGEIDYAIALSLAEEDEKGMEEEANKGSIPEEDKKSTSAEEDPKRAVAEEDQKGKKVIILEESESDEDEPAAKVQLDEDEQLAKALQESLNVSPPRYNSGNFFQPYPFFPAGYRICAGCNTGIGHGRFLSCMDAVWHPECFRCHACNQPITDYEFSMSGNRPYHKSCYKEKHHPRCDVCKNFIPTNSAGLVEYRAHPFWHQKYCPSHERDGTPRCCSCERMEPRDTNYLILDDGRKLCLECLDSSIMDTHECQPLYLEIQDFYEGLNMKVEQQIPMLLVERQALNEALEGEKNGHHHMPETRGLCLSEEQTVATISRRPRIGAGHRILDMFTEPYRLIRRCEVTAILVLFGLPRLLTGSILAHEMMHAWLRLKGYPNLSPEVEEGICQVLAHMWLDSEMYSSPGNDLPSSSSSSSSSSPSSSSVQVASKKGVRSEPEKKLCEFFKHQIESDSSSAYGDGFRIGNKAVTEYGLRRTLDHIKITGTFPF 531
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 12073596 12079223 - Bda028069.1 Bda14g01211 21262

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda14g01211 531 PANTHER PROTEIN DA1-RELATED 2 1 530 IPR045218 -
Bda14g01211 531 Pfam LIM domain 160 215 IPR001781 -
Bda14g01211 531 Gene3D Cysteine Rich Protein 155 219 - -
Bda14g01211 531 SMART uim 121 140 IPR003903 -
Bda14g01211 531 SMART uim 43 62 IPR003903 -
Bda14g01211 531 MobiDBLite consensus disorder prediction 448 473 - -
Bda14g01211 531 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 186 244 - -
Bda14g01211 531 ProSiteProfiles LIM domain profile. 158 218 IPR001781 -
Bda14g01211 531 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 121 140 IPR003903 -
Bda14g01211 531 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 152 185 - -
Bda14g01211 531 MobiDBLite consensus disorder prediction 56 115 - -
Bda14g01211 531 Pfam Protein DA1 309 525 IPR022087 -
Bda14g01211 531 MobiDBLite consensus disorder prediction 448 477 - -
Bda14g01211 531 SMART lim_4 159 211 IPR001781 -
Bda14g01211 531 MobiDBLite consensus disorder prediction 56 106 - -
Bda14g01211 531 CDD LIM_DA1 160 212 - -
Bda14g01211 531 ProSitePatterns LIM zinc-binding domain signature. 160 194 IPR001781 -
Bda14g01211 531 CDD LIM 187 262 - -
Bda14g01211 531 PANTHER TRANSCRIPTION FACTOR INTERACTOR AND REGULATOR LIM FAMILY-RELATED 1 530 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda14g01211 - - - jre:108997551 822.772
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda08g01302 Bda-Chr8:52733587 Bda14g01211 Bda-Chr14:12073596 0 dispersed
Bda14g00279 Bda-Chr14:1877425 Bda14g01211 Bda-Chr14:12073596 5.15E-175 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g901 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda14g01211 . . Bma03g01077 . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001147 2 4 2 2 2 2 2 2 2 2 2 2 4 2 2 3 2 6 3 2 2 2 2 2 2 3 2 9 2 3 79
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17104 PF12315 DA1-like 1.00E-101 CL0126 Bda TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda14g01211 Bda_Chr14 FPKM 235.582977 258.674347 0.0 0.0 0.0 0.0 0.0 0.0 0.0