Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda14g01224 ATGGCAGCCATTAAAGATTTTACAGCGTCCTTGCTACTTCTTCTTTTCATGGATACGAGCTACCTTGGAAGAGCAGCCGATAACGGAGGAGGAGGAGGAGGGTTAGGAGCTTCGTTTATCTTTGGAGATTCTCTTGTTGATGCCGGAAATAATAACTATTTGCCAACTTTATCCAAGGCTAATATTCCTCCAAACGGTATTGATTTCAAAGCCTCCGGTGGACAACCCACTGGCCGGTATACTAATGGAAGAACTATTAGCGACATCATCGGTCAAGAACTCGGACAGCCGAAATTCGCCATGCCGTTCTTGGCACCAAACGCGACTGGAAGAGACATCTTGGACGGTGTAAATTATGCGTCCGGGGGAGGAGGAATTTTGAATGCAACTGGAAGAATATTTGTGAATAGATTAGGAATGGATATTCAGGTTGATTACTTCAACGTTACAAGAAGAGAGTTTGACAAATTACTGGGTCCCTCCAAAGCAAGAGATTATATAATCAAACGGTCCATATTTTCCATCACCATCGGATCCAACGATTTCCTCAACAACTATCTTCTTCCACTGATTTCTATTGGAGAAAGATTATCAGAGGGCCCAGAAGCTTTCATTGAGGACATGATCAAACACCTCAACCTCCAATTAATCAGACTCTATAAACTAGATGCTCGAAAATTCGTGATCGGAAATGTCGGGCCGATAGGTTGCATACCATATCAAAAGACGATAAATCGATTGAAAAAAGACGAGTGTGTAGAGTTGCCTAACAAAATGGCATTACGATATAATAGTCGATTGAAGGATTTGTTAGCTGAGCTAAACGAAAAGTTGCCTGGCTCAAAATTTGTCTACGCTAACATCTATGATCTCGTGATGGACCTTGTTCAAAACTACAAACATCATGGATTTTCAACGGCCAGTCAAGCATGTTGTAAGAACATAGGGCGATTTGCCGGAATAATTCCATGCGGGCTGCAATCACACGTGTGCTCTAATCGATCGAAATATGTATTTTGGGATCCATACCATCCGAGCGAAGCGGCCAACCTTGTCATCGCCAACCGGTTGCTAGATGGTGACACAAAGTATATTTCTCCTCTTAATCTCAGACAGCTTCGAGACCTCTAA 1131 42.62 MAAIKDFTASLLLLLFMDTSYLGRAADNGGGGGGLGASFIFGDSLVDAGNNNYLPTLSKANIPPNGIDFKASGGQPTGRYTNGRTISDIIGQELGQPKFAMPFLAPNATGRDILDGVNYASGGGGILNATGRIFVNRLGMDIQVDYFNVTRREFDKLLGPSKARDYIIKRSIFSITIGSNDFLNNYLLPLISIGERLSEGPEAFIEDMIKHLNLQLIRLYKLDARKFVIGNVGPIGCIPYQKTINRLKKDECVELPNKMALRYNSRLKDLLAELNEKLPGSKFVYANIYDLVMDLVQNYKHHGFSTASQACCKNIGRFAGIIPCGLQSHVCSNRSKYVFWDPYHPSEAANLVIANRLLDGDTKYISPLNLRQLRDL 376
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 12345572 12347712 + Bda028088.1 Bda14g01224 21275

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda14g01224 376 CDD SGNH_plant_lipase_like 37 361 IPR035669 -
Bda14g01224 376 Pfam GDSL-like Lipase/Acylhydrolase 39 356 IPR001087 GO:0016788
Bda14g01224 376 SUPERFAMILY SGNH hydrolase 41 359 - -
Bda14g01224 376 PANTHER BNAA09G41930D PROTEIN 7 375 - -
Bda14g01224 376 Gene3D SGNH hydrolase 34 360 IPR036514 -
Bda14g01224 376 PANTHER GDSL LIPASE/ACYLHYDROLASE FAMILY PROTEIN (AFU_ORTHOLOGUE AFUA_4G14700) 7 375 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda14g01224 - - - jre:109016726 586.26
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g00710 Bda-Chr3:6031299 Bda14g01224 Bda-Chr14:12345572 1.91E-33 dispersed
Bda14g01224 Bda-Chr14:12345572 Bda03g00345 Bda-Chr3:2912657 9.80E-84 dispersed
Bda07g00153 Bda-Chr7:1900326 Bda14g01224 Bda-Chr14:12345572 1.49E-15 transposed
Bda11g01418 Bda-Chr11:18723265 Bda14g01224 Bda-Chr14:12345572 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g849 Blo04g00958 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cme05g01162 . . . Bda14g01224 . . . . . . . . . . Car05g00713 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009571 2 1 2 0 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda14g01224 Bda_Chr14 FPKM 2.694118 3.584129 6.706687 7.395827 24.486767 22.667286 23.701954 11.388519 11.309586