Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bda14g01228 | ATGTCATCGTCGAATTCTCCGTGCGCGGCCTGCAAGGTACGGAGGTGTAAATGCACGCAAGAGTGTGTATTCGCACCGTATTTTCCATCAGATCAGCCTCAGAAATTCGCAAATGTCCACAACGTGTTCGGCGCAAGCAACGTGGCCAAGCTGCTCAACGAACTCGACGCTAGGCACCGGGAAGACGCAGTCAACTCTCTGGCTTACGAGGCCGAGTTTCGCCTCCGAGACCCAGTCTACGGTTGCGTCGGTCTGATCTCCATCCTTCAGCACAGACTGAAGCAAATGCAAAGCGATCTCATCAACGCCAAAAAAGAGTTAGCCACCTACATTGGGCCTCAGGCAATGCTTCCTGTAATGCAACCTTCAGGGATGATGATGGCTCAACAACAACAACATCCAGGCAATCCTTCGTCTTCCTCCATAATGCCTTATAACATGCAGCCCATGATGAGTATCCCGGCTGGTCCTTCCGGGCAAATGATGATTCGTGAGCCTCACCAACAACAGCATCAACACCAGCTTCATCAGCAACAGTTGTTTGAGGCTCAGCAATTGGCCGCAGCCGTAGCGGCTAGAGAGCAGCAAGATATGTTTAGTGCTTTCGAGCCAAAAGAACAACAAATGGACCCCCGCCATCATCATCCCCAACAGCAGCAGCAAGAGCTTTTACGGTTACATAATGGGTTCGACCCATCTCCGGTATCCGCCAGTGGGTTTAATCAGCTGAACAACGCTTCTGCTTTGTCCCCTTCTTTGGCCCTGGGCACTTTCGATAATGCATACCACCTTCAACCAGAGATTTCAGAGCATCCTCACTCCCATTATCATCATCAACAGCAGCAACAGCAGCAACAGCTTCAGGCTCAGCCTTTGCTCCAACCACAGCAGCAGCCACAACCACCCACCCAATCCCAGCTTTTGCAGCGGCAAAAGGCAGATAGCGAGAACGACAGAATCATGGGTCCCTCTGGTTAG | 978 | 51.64 | MSSSNSPCAACKVRRCKCTQECVFAPYFPSDQPQKFANVHNVFGASNVAKLLNELDARHREDAVNSLAYEAEFRLRDPVYGCVGLISILQHRLKQMQSDLINAKKELATYIGPQAMLPVMQPSGMMMAQQQQHPGNPSSSSIMPYNMQPMMSIPAGPSGQMMIREPHQQQHQHQLHQQQLFEAQQLAAAVAAREQQDMFSAFEPKEQQMDPRHHHPQQQQQELLRLHNGFDPSPVSASGFNQLNNASALSPSLALGTFDNAYHLQPEISEHPHSHYHHQQQQQQQQLQAQPLLQPQQQPQPPTQSQLLQRQKADSENDRIMGPSG | 325 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
14 | 12457879 | 12458856 | - | Bda028093.1 | Bda14g01228 | 21279 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bda14g01228 | 325 | ProSiteProfiles | LOB domain profile. | 6 | 107 | IPR004883 | - | |
Bda14g01228 | 325 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 36-LIKE | 1 | 302 | - | - | |
Bda14g01228 | 325 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 4-RELATED | 1 | 302 | - | - | |
Bda14g01228 | 325 | Coils | Coil | 86 | 106 | - | - | |
Bda14g01228 | 325 | MobiDBLite | consensus disorder prediction | 278 | 311 | - | - | |
Bda14g01228 | 325 | Pfam | Lateral organ boundaries (LOB) domain | 7 | 103 | IPR004883 | - | |
Bda14g01228 | 325 | MobiDBLite | consensus disorder prediction | 272 | 325 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bda14g01228 | Bda-Chr14:12457879 | Bda15g00546 | Bda-Chr15:8519291 | 7.41E-46 | dispersed | |
Bda11g01424 | Bda-Chr11:18932366 | Bda14g01228 | Bda-Chr14:12457879 | 1.60E-137 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
17107 | PF03195 | LOB | 9.40E-39 | No_clan | Bda | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bda14g01228 | - | - | jre:109018950 | 343.584 |