Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda14g01239 ATGGCCGACGAGCAACCTACGATCGCTGGTCGACGGAGGAGTCGCGGCTCCGAGGCATTGGCCCGTGCTGACGCTCTTCAACGCCTAAAAGCCCTAAGAAGCGGTGGCCGACGGTCTGACAATGGCGGAGTGCAAATTAAAGTGGAAAACCCTATTTATGACAGTGTTCCTGAGGATGAGTACGACGCACTGGTCGCCAAGCGTCGGGAAGAAGTTAAAGGGTTTATCGTCGACGACGACGGACTTGGGTACTGCGACGAAGGCGAGGAGGAGGATTGGTCCAAAACTGGACTTCCTTTGTCTTCTGATGATTCCGAAGGTGAAAGGGAGAGACCTAAGAAAAAGAAGGTGGAGAAGAAAGAATCGCAGCCTAAAAAACAGTCTTCTTCACTTTCGGCAGCTGCAGCAATGATGGGGAAGCAAAGGCTTTCTTCTATGTTCACTTCATCAATTTTTAAGAAGAGTGGCAGAGATGATAAATCTAAAGGTTTGGTATGCGATACACTTGTGGACGATGTAATTGCAGAGTTTGCTCCAGACGAGGAAGATAGAGAAAAACGAAGAAGGGGGCAGATGAATTCCATGCAGATTTCAAAGAATTTAGTGCCAATTGCTGGTGTTAAGAATGACAAACCTTGTGTTCGAACTTTTAATCCGGCATTCAGTCATGAAGTTTCTAAGGCTGTGGATATTGGAGAGTTGAAACGTAGCAAGATTAATACTAATGGAAATTCAGACTTAGTTTTTGTGCAAGGTGACGTGGAAGTTAAGAGAGATGGTGTAAATGAAGAATTTAAGGAAGATAAAGACTTCATTTCCAAATTCGGAGAGGACACATCTGAGCATGTGCATGTTTCGCCACCCAAGGAAAGTTTAGTTGAAGAGCAGGATCCGAAAATGATTGAAATAAAAGCAGAACAGGTGGTGAAGGACGGAGCTTATACTTTGAATGCAAAAATTAGAGAAGAAAGTAACCCTGAATTAAGCGCCATTGTTGGATGGCAGGCGGTAAGAAGTCAGCGGAATTGCGACATTGATGGTGTTGCAGAAATCAATAATAGCACATGTTCTGAGGAAAAATGTGAATTAGATCTTGACTCAAATAGCGCTATGCCTTTCTACATAGTCGATGCATATGAGGAATTATATGGTGCTAACACTGGGAATGTGTATCTTTTCGGAAAGGTCAAATCTGGAGGTATGCATCATAGTTGTTGTGTTGTTGTGAAGAATATGCAGAGATGTGCATATGCAATTCCAAAAGATTTCTTTCTTCGCTCAGATGAGATGATTAAGCTCGAGAAAGATGTGGAAGAGTCTCGACTTTCTCCAGCAGATCTCCGAAAAAAACTGCAAGAAGCGACTGCAGGATTAAAGAAGGAAGTATCAAAGCATTTGTTAGATCTCAGCATCTCATCTTTTAGCATGACTCCTGTTAAGAGGAAGTATGCCTTTGAGCGACATGATATACCTTCAGGAGAAAACTATGTTCTTAAGATCAACTATTCGTTCAAGGACAACCCTCTTCCATCAGATCTAAAAGGAGAATCATTTTCTGCTCTTCTAGGAACTCATTGCAGTGCCTTGGAGCTCTTTCTTGTTAAAAGAAAGATAAAGGGACCATCTTGGTTGTCAGTTTCCAAGTTTTCTACTTGCCCCACTCCCCAACGGGTAAGCTGGTGCAAATTTGAGGTGACTGTGGACTCTCCAAAAGATATATGTATTTCTTCAAACAATACAATGGAGATCCCTCCTGTTGTTGTTGCTGCAATAAATTTGAAGACTATCATCAATGAAAAGCAGAATGCTAATGAAATTGTTTCCGCATCTGTCATTTGTTGTCACAAAGTCAAGATTGACACTCCCATGTTGTCTTCAGAATGGAAGAGACCTGGTATGCTGAGACATTTTACAGTTGTTCGAAAGGTTGACGGAGCTATATTTCCGATGGGGTTCTCTAAAGAGGCTACAGATAGAAATTCTAAGGCTGGATATAATGTCTTAATCTCTGAAAGCAATGAAAGGGCTTTGTTAAATCGACTAATGATTGAGCTATACAAATTGGATATCGATGTACTGGTTGGACATAACATTTCAGGGTTTGACCTGGACGTTCTCCTCCATAGAGCTCAGGCTTGCAGAGTTCCAAGCAGCACGTGGTCCAAAATTGGTCGCCTAAAGCGGTCTGTGATGCCTAAGCTTGGAAAAGGAACCAACATTTTTGGGTCTGGGGCAAGTCTTGGAATCATGTCTTGCATTGCTGGTCGACTTTTATGTGACACATACTTGTGTTCCCGTGATTTATTGAAAGAGGTTAGTTACTCCCTGACAGAATTGTCTAAGACCCAGCTTAATAAGGACCGCAAGGAGATTACTCCTCATGATATTCCCAGAATGTTCCAGACATCAGAATCTCTAATGCAACTTATTGAATTTGGTGAGACAGATGCATGGTTGTCTATGGAACTCATGTTTCATTTGAGTGTTCTTCCTCTAACACGGCAGCTGACTAATATCAGTGGTAATCTTTGGGGGAAAACTCTACAAGGTGCTAGGGCTCAAAGAGTGGAGTATCTGCTTCTTCATGCATTCCATGCTAAGAAATATATTGTGCCAGACAAAATTTCTTCTCAAAATAAGGATAAAAGTTTGAAAAAAAGGACAAGCAATGGTATTGAGGAGAGAAACGTGAATCAACTTGACATGGATGAAGTGAATCTCAATTATGATGCTTCACACGACGACATTGGAAAAGGAAAGAAGGGACCTTCCTACGCAGGTGGGCTAGTCTTGGAGCCAAAAAAAGGTTTATATGATAAGTATATATTGCTTCTGGATTTCAATAGTCTTTATCCTTCTATAATACAGGAATATAATATTTGCTTCACTACAGTAAATATACCTTCAGATGGGGCTGTTCCTCGTCTTCCATCTACTAAAACTATGGGAGTTCTTCCGGAGCTGTTAAAAAATCTAGTTCAAAGAAGAAGAATGGTGAAGTCATGGATGAAGAATGCATCTGGTCTCAAGGTGCAGCAACTAGACATTCAACAGCAGGCACTAAAGCTCACTGCAAATAGTATGTATGGATGTCTGGGATTTTCTAATTCAAGGTTTTATGCAAAGCCACTTGCAGAGCTTATAACCCTACAAGGAAGGGAGATTCTGCAGAGTACTGTTGATCTTGTTCAGAATAATTTGAACTTGGAGGTAATATATGGTGATACAGATTCCATTATGATTTATAGTGGATTGGACGATATACCACAAGCAAAAGCAATTGCGGGAAAAGTTAACAAGAGATATAAGTGTTTGGAAATTGATCTTGATGGTTTATACAAGAGAATGTTGCTTCTAAAGAAAAAGAAGTATGCAGCTGTAAAGGTGCAGTTCAAGGATGGAATACCATACGAGGTTATTGAACGGAAGGGCCTTGATATAGTTCGCCGGGACTGGAGCTTACTATCAAAGGAATTAGGAGATTTCTGTTTAAGTCAAATATTGTCTGGAGGGTCATGTGAAGATGTTGTTGAATCAATTCACAACTCTCTTTTGAAGACACAAGAAGAAATGAGGAATGGGCAAGTACCGCTTGATAAATATATCATCACAAAGACAATGACTAAGCCACCCGAAGCATACCCAGATGCCAGAAATCAACCCCACGTTCAAGTGGCACAAAGGTTGAAGCAAATGGGGTATTCTACTGGTTTTTCTGTAGGTGACACCATTCCTTACATAATCTGTCGTGAGCAGGGATCCTCTTCTGATACTTCTACAGGAATTGCACAACGTGCTCGTCATCCCGAGGAGTTGAAAAGAGAAGACGGGAAATGGATAATTGACATTGATTACTATCTGTCACAACAGATTCATCCAGTCATCTCGCGACTTTGCGCTTCAATTCAGGGTACTAGTCCAGAACGCTTAGCTGATTGTTTAGGGCTCGACTCTTCCAAGTTCCACATTAAGTCAATTGAAGCTGTGAGTGATGCTTCCTCTTCAAACTTGTTTTCATTAGATGACGAGGAAAGATATCGGGGTTGCAAACCTCTGACATTGTCATGTCCAAGCTGTTCGATTACATTTGATTGCCCGACTATCTTTAGCACAATTTGTACATCAGTCGGTGAAAAGACTATGTCTAATGTGGATGAATCGACCACAAGTTTTTGGAGCAAATTGCATTGTCCTAAATGCCCAGAAGATGGCAATGTGGGTAGAATCTCTCCTGGCATGCTTGCCAATCAGGTTAAAAGGCAAGCAGCGTGGTTCATTTCAATGTATTACAAAGGCGTAATGATGTGTGATGAAGAGACTTGCAAGTGCACGACTCGCTCTCTCAATCTCCGTCTTATTGGTGATGCTGAGAAAGGAACAGTATGCCCAAATTATCCACACTGCAAAGGTCGTCTTGTGAGAAAGTACTCGGCTAAGGATCTATACAAGCAAGTTTTATATTTCTGCTTTGTATTGGATACAGTACGATGTATAGAAAAGGTGGAAATCAGCACCAGAATGACATTAGAGAAAAAATTGGCCAAAATTCGACCAATGGTTGATTTAGCGGCATCTACCATTCATCGTATTCGAGATCAGAATGCATATGGTTGGGTAAAGTTGCAGGATATTGCCGTCACAATTTGA 4647 41.25 MADEQPTIAGRRRSRGSEALARADALQRLKALRSGGRRSDNGGVQIKVENPIYDSVPEDEYDALVAKRREEVKGFIVDDDGLGYCDEGEEEDWSKTGLPLSSDDSEGERERPKKKKVEKKESQPKKQSSSLSAAAAMMGKQRLSSMFTSSIFKKSGRDDKSKGLVCDTLVDDVIAEFAPDEEDREKRRRGQMNSMQISKNLVPIAGVKNDKPCVRTFNPAFSHEVSKAVDIGELKRSKINTNGNSDLVFVQGDVEVKRDGVNEEFKEDKDFISKFGEDTSEHVHVSPPKESLVEEQDPKMIEIKAEQVVKDGAYTLNAKIREESNPELSAIVGWQAVRSQRNCDIDGVAEINNSTCSEEKCELDLDSNSAMPFYIVDAYEELYGANTGNVYLFGKVKSGGMHHSCCVVVKNMQRCAYAIPKDFFLRSDEMIKLEKDVEESRLSPADLRKKLQEATAGLKKEVSKHLLDLSISSFSMTPVKRKYAFERHDIPSGENYVLKINYSFKDNPLPSDLKGESFSALLGTHCSALELFLVKRKIKGPSWLSVSKFSTCPTPQRVSWCKFEVTVDSPKDICISSNNTMEIPPVVVAAINLKTIINEKQNANEIVSASVICCHKVKIDTPMLSSEWKRPGMLRHFTVVRKVDGAIFPMGFSKEATDRNSKAGYNVLISESNERALLNRLMIELYKLDIDVLVGHNISGFDLDVLLHRAQACRVPSSTWSKIGRLKRSVMPKLGKGTNIFGSGASLGIMSCIAGRLLCDTYLCSRDLLKEVSYSLTELSKTQLNKDRKEITPHDIPRMFQTSESLMQLIEFGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFHAKKYIVPDKISSQNKDKSLKKRTSNGIEERNVNQLDMDEVNLNYDASHDDIGKGKKGPSYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVNIPSDGAVPRLPSTKTMGVLPELLKNLVQRRRMVKSWMKNASGLKVQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITLQGREILQSTVDLVQNNLNLEVIYGDTDSIMIYSGLDDIPQAKAIAGKVNKRYKCLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGIPYEVIERKGLDIVRRDWSLLSKELGDFCLSQILSGGSCEDVVESIHNSLLKTQEEMRNGQVPLDKYIITKTMTKPPEAYPDARNQPHVQVAQRLKQMGYSTGFSVGDTIPYIICREQGSSSDTSTGIAQRARHPEELKREDGKWIIDIDYYLSQQIHPVISRLCASIQGTSPERLADCLGLDSSKFHIKSIEAVSDASSSNLFSLDDEERYRGCKPLTLSCPSCSITFDCPTIFSTICTSVGEKTMSNVDESTTSFWSKLHCPKCPEDGNVGRISPGMLANQVKRQAAWFISMYYKGVMMCDEETCKCTTRSLNLRLIGDAEKGTVCPNYPHCKGRLVRKYSAKDLYKQVLYFCFVLDTVRCIEKVEISTRMTLEKKLAKIRPMVDLAASTIHRIRDQNAYGWVKLQDIAVTI 1548
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 12781813 12793393 - Bda028115.1 Bda14g01239 21290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda14g01239 1548 SUPERFAMILY DNA/RNA polymerases 868 1317 IPR043502 -
Bda14g01239 1548 MobiDBLite consensus disorder prediction 1 20 - -
Bda14g01239 1548 ProSitePatterns DNA polymerase family B signature. 1073 1081 IPR017964 GO:0000166|GO:0003676
Bda14g01239 1548 MobiDBLite consensus disorder prediction 79 137 - -
Bda14g01239 1548 CDD DNA_polB_alpha_exo 584 835 - -
Bda14g01239 1548 SUPERFAMILY Ribonuclease H-like 372 872 IPR012337 -
Bda14g01239 1548 Gene3D - 373 572 - -
Bda14g01239 1548 CDD POLBc_alpha 918 1317 IPR045846 GO:0003887|GO:1902975
Bda14g01239 1548 Pfam DNA polymerase family B, exonuclease domain 402 778 IPR006133 -
Bda14g01239 1548 TIGRFAM pol2: DNA polymerase (pol2) 51 1299 - -
Bda14g01239 1548 Pfam DNA Polymerase alpha zinc finger 1340 1544 IPR015088 GO:0003887|GO:0006260
Bda14g01239 1548 Gene3D - 584 899 IPR036397 GO:0003676
Bda14g01239 1548 PANTHER DNA POLYMERASE ALPHA CATALYTIC SUBUNIT 14 1546 - -
Bda14g01239 1548 MobiDBLite consensus disorder prediction 88 125 - -
Bda14g01239 1548 MobiDBLite consensus disorder prediction 1 19 - -
Bda14g01239 1548 Gene3D DNA Polymerase alpha, zinc finger 1339 1533 IPR038256 -
Bda14g01239 1548 Gene3D - 1145 1330 IPR042087 -
Bda14g01239 1548 PRINTS DNA-directed DNA-polymerase family B signature 942 955 IPR006172 GO:0000166|GO:0003676|GO:0003887
Bda14g01239 1548 PRINTS DNA-directed DNA-polymerase family B signature 1018 1030 IPR006172 GO:0000166|GO:0003676|GO:0003887
Bda14g01239 1548 PRINTS DNA-directed DNA-polymerase family B signature 1071 1079 IPR006172 GO:0000166|GO:0003676|GO:0003887
Bda14g01239 1548 Gene3D Palm domain of DNA polymerase 912 1132 IPR023211 -
Bda14g01239 1548 Pfam DNA polymerase family B 843 1301 IPR006134 GO:0000166|GO:0003677
Bda14g01239 1548 SMART polmehr3 584 1085 IPR006172 GO:0000166|GO:0003676|GO:0003887
Bda14g01239 1548 Pfam DNA polymerase alpha subunit p180 N terminal 26 93 IPR024647 -
Bda14g01239 1548 Gene3D - 413 539 - -
Bda14g01239 1548 Gene3D Helix hairpin bin 981 1032 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda12g00410 Bda-Chr12:4970474 Bda14g01239 Bda-Chr14:12781813 6.75E-24 dispersed
Bda14g01239 Bda-Chr14:12781813 Bda14g01247 Bda-Chr14:12938393 0 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda14g01239 K02320 - jre:109009092 2238.0