Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda14g01250 ATGTGGGATCTGAATGACTCGCCCGATCAGAAAAAAGACACTGAATCCGACGGCTGTTCTTCCCTCAAGACTTCAATCGACGGGGACGGGGACGGCGACAAGGGGAAACGGGTCGGATGCTTTTCGAATTCAAGTTCTTCTGCAGTTGTGATCGAAGACGGATCCGACGAAGACTGCGGCGATAAGGAAGCAACACCTCAGGACTTTATGGAAACGGATAACCCGGTGACCCGGCAGTTTTTCCCGGTGGAAGACTCCCAAGTCGGCGCTTCTCCGGAGGGAGGTGGCAGTGGCGGTGCTTCGTTCCCTCGGGCTCGCTGGGTTGGGGTGAAATTCTGTCAGACAGAACCTGTCGTAGATACTGGAACGTCATCTGAGAAGTCGCTGCCGATGAAAAAGAGCCGCCGAGGGCCGAGGTCCCGTAGTTCTCAGTATCGTGGCGTCACGTTCTACCGAAGAACCGGCCGATGGGAATCCCATATCTGGGATTGTGGAAAACAGGTTTATCTAGGTGGATTTGATACTGCACATGCAGCTGCTCGGGCTTACGATAGAGCAGCCATTAAATTCCGAGGAACAGAAGCTGACATAAATTTCGGCATCTATGACTATGAAGACGACTTGAAACAAATGAGGAACTTAACAAAGGAAGAATTTGTGCATGTTCTTCGTCGACAAAGCACTGGGTTTCCGAGGGGAAGCTCCAAGTACAGAGGCGTAACCCTACATAAGTGTGGAAGATGGGAGGCTCGAATGGGCCAGTTTCTTGGCAAAAAGTACGTTTATTTGGGTTTGTTCGACACCGAGATTGAAGCTGCAAAGGCTTATGATAAAGCAGCCATTAAATGTAATGGTAAAGACGCTGTCACCAACTTTGATCCAAGCATATACGGGACAGAACTCGACGGAAAAGAATCGTCGAATAATGGAGTGGAGCACAATCTTGATCTGAGTTTAGGGAATTCAAACTCGAATGCAAGCAGCTTGCCCCCAGAGAATAATGGCAGAAGCTCTGCACATTTATCTGCATCTTTTCCATTTAAATCAGATTGGCAAAATCAAGGATTTAGACCGCAGGATCAGCTGAGTGGAAGGGGAAATGAGTATTTTCATGGTAGGGAGAGAAGCCTCGAGACTCAAACCATGCAGCTACTCGGCCAGACCCACCATCAACCTCTTGCTCACAGCACTCCAGGGCTAAATCCACAAAATTATCAAACTCGGTTTTTAACAAGTAGCAGCAATGGACGTAGAGTAGGAAGTGATCTTTCACTGTCTATTAATGACCAGCAATGGCAATCTAGTTCTTCTCAACAGTTTGCACTTGCTGCAGCATCATCAGGATTCCCACCCCAGATCAGATCGACTTTCCAGAATCATTTTCTGCATAAAAATGGATTGAACTTTCTCGTAAGACCCTCTTAA 1425 47.79 MWDLNDSPDQKKDTESDGCSSLKTSIDGDGDGDKGKRVGCFSNSSSSAVVIEDGSDEDCGDKEATPQDFMETDNPVTRQFFPVEDSQVGASPEGGGSGGASFPRARWVGVKFCQTEPVVDTGTSSEKSLPMKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGTEADINFGIYDYEDDLKQMRNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEIEAAKAYDKAAIKCNGKDAVTNFDPSIYGTELDGKESSNNGVEHNLDLSLGNSNSNASSLPPENNGRSSAHLSASFPFKSDWQNQGFRPQDQLSGRGNEYFHGRERSLETQTMQLLGQTHHQPLAHSTPGLNPQNYQTRFLTSSSNGRRVGSDLSLSINDQQWQSSSSQQFALAAASSGFPPQIRSTFQNHFLHKNGLNFLVRPS 474
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 13001301 13003774 + Bda028130.1 Bda14g01250 21301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda14g01250 474 MobiDBLite consensus disorder prediction 119 144 - -
Bda14g01250 474 Gene3D AP2/ERF domain 235 294 IPR036955 GO:0003700|GO:0006355
Bda14g01250 474 Gene3D AP2/ERF domain 143 201 IPR036955 GO:0003700|GO:0006355
Bda14g01250 474 MobiDBLite consensus disorder prediction 1 75 - -
Bda14g01250 474 CDD AP2 235 295 IPR001471 GO:0003700|GO:0006355
Bda14g01250 474 Pfam AP2 domain 144 192 IPR001471 GO:0003700|GO:0006355
Bda14g01250 474 Pfam AP2 domain 235 284 IPR001471 GO:0003700|GO:0006355
Bda14g01250 474 SUPERFAMILY DNA-binding domain 235 295 IPR016177 GO:0003677
Bda14g01250 474 MobiDBLite consensus disorder prediction 1 18 - -
Bda14g01250 474 MobiDBLite consensus disorder prediction 301 341 - -
Bda14g01250 474 CDD AP2 144 199 IPR001471 GO:0003700|GO:0006355
Bda14g01250 474 PRINTS Ethylene responsive element binding protein signature 275 295 IPR001471 GO:0003700|GO:0006355
Bda14g01250 474 PRINTS Ethylene responsive element binding protein signature 237 248 IPR001471 GO:0003700|GO:0006355
Bda14g01250 474 SMART rav1_2 236 299 IPR001471 GO:0003700|GO:0006355
Bda14g01250 474 SMART rav1_2 144 206 IPR001471 GO:0003700|GO:0006355
Bda14g01250 474 ProSiteProfiles AP2/ERF domain profile. 236 293 IPR001471 GO:0003700|GO:0006355
Bda14g01250 474 SUPERFAMILY DNA-binding domain 143 200 IPR016177 GO:0003677
Bda14g01250 474 ProSiteProfiles AP2/ERF domain profile. 144 200 IPR001471 GO:0003700|GO:0006355
Bda14g01250 474 PANTHER AP2 DOMAIN TRANSCRIPTION FACTOR 1 64 - -
Bda14g01250 474 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 64 - -
Bda14g01250 474 PANTHER AP2 DOMAIN TRANSCRIPTION FACTOR 69 472 - -
Bda14g01250 474 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 69 472 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda02g00787 Bda-Chr2:48582555 Bda14g01250 Bda-Chr14:13001301 8.07E-102 dispersed
Bda04g00251 Bda-Chr4:19847284 Bda14g01250 Bda-Chr14:13001301 5.30E-145 dispersed
Bda09g01480 Bda-Chr9:46582710 Bda14g01250 Bda-Chr14:13001301 6.55E-85 dispersed
Bda14g00335 Bda-Chr14:2389991 Bda14g01250 Bda-Chr14:13001301 5.34E-12 dispersed
Bda14g01250 Bda-Chr14:13001301 Bda10g00018 Bda-Chr10:354206 5.93E-48 dispersed
Bda14g01250 Bda-Chr14:13001301 Bda14g01253 Bda-Chr14:13087803 0 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17110 PF00847 AP2 5.00E-10 CL0081 Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda14g01250 K09284 - qsu:111995790 548.51